barSeed - Barley Seed Development Database

Probe CUST_29072_PI390587928

Source Contig U35_29940

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29072_PI390587928	Hv_44K_v2	CGGATTAAATCAATGCTTTACTAGGAAAGGTGTAGATGAACATGTACTGTTTGTCATGTT	364	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363817	5986	2e-24	5901 - 5960	100	60 / 60	plus	ABC04362 ABC06621 ABC14088 ABC15766 ABC40605
MLOC	MLOC_68449.1	2270	7e-23	2037 - 2096	98	59 / 60	plus	None
JLOC1	JLOC1_45290.1	2225	4e-23	2051 - 2110	98	59 / 60	plus
Harvest21	ABC29536	470	3e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_29940	470	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_29940 470 Hv_44K_v2
GGCGGAAACGCCGCCGCCGTCGGCGACAAGATATGCAAGGGGGTGACGTGCTTCAAGCAC
GCGTTCCTCATCATCACCGGGGTCACGCTCGCCGGCGTGCTCGTGTCCCTGGTGCTGGTG
TGGAGGACGAGGAACTTCTACAAGGGTGACATATACGCCAAGTTCAAGGTGGCGCCCGTC
GTCGTCACGGGCACAGCAGCCGACGGGAGCGACCGAGGAACGGAAATGGTGGAGGGCACA
GCTACAGTTACAGAGGACGGTGGGGCCAAGGAGGGGAAGAAAAAGAAACAAGATCAGGTC
AACGACGAAGAATTTAACTGATCACCCAACACATATACTCTACTAGTACTGTGCTAATTT
CGTTCGGATTAAATCAATGCTTTACTAGGAAAGGTGTAGATGAACATGTACTGTTTGTCA
TGTTACTAATTCTTATATGGTTTTTTTGCTAATTCATATATAGTACTCCT

Homology of Contig U35_29940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None