- Probe CUST_29072_PI390587928
- Source Contig U35_29940
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29072_PI390587928 | Hv_44K_v2 | CGGATTAAATCAATGCTTTACTAGGAAAGGTGTAGATGAACATGTACTGTTTGTCATGTT | 364 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK363817 | 5986 | 2e-24 | 5901 - 5960 | 100 | 60 / 60 | plus | ABC04362 ABC06621 ABC14088 ABC15766 ABC40605 |
MLOC | MLOC_68449.1 | 2270 | 7e-23 | 2037 - 2096 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_45290.1 | 2225 | 4e-23 | 2051 - 2110 | 98 | 59 / 60 | plus | |
Harvest21 | ABC29536 | 470 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29940 | 470 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus |
Contig Sequence (470 bp)
>U35_29940 470 Hv_44K_v2 GGCGGAAACGCCGCCGCCGTCGGCGACAAGATATGCAAGGGGGTGACGTGCTTCAAGCAC GCGTTCCTCATCATCACCGGGGTCACGCTCGCCGGCGTGCTCGTGTCCCTGGTGCTGGTG TGGAGGACGAGGAACTTCTACAAGGGTGACATATACGCCAAGTTCAAGGTGGCGCCCGTC GTCGTCACGGGCACAGCAGCCGACGGGAGCGACCGAGGAACGGAAATGGTGGAGGGCACA GCTACAGTTACAGAGGACGGTGGGGCCAAGGAGGGGAAGAAAAAGAAACAAGATCAGGTC AACGACGAAGAATTTAACTGATCACCCAACACATATACTCTACTAGTACTGTGCTAATTT CGTTCGGATTAAATCAATGCTTTACTAGGAAAGGTGTAGATGAACATGTACTGTTTGTCA TGTTACTAATTCTTATATGGTTTTTTTGCTAATTCATATATAGTACTCCT
Homology of Contig U35_29940 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |