barSeed - Barley Seed Development Database

Probe CUST_2906_PI390587928

Source Contig U35_28305

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2906_PI390587928	Hv_44K_v2	ACTGTTATCTGGATGGGAAAGAAGCAAGAGTCTGTTGAGGATGTTCCCTGTGGTAACACT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361008	1917	2e-24	490 - 549	100	60 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	AK250137.1	2948	2e-24	1435 - 1494	100	60 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_42305.1	1079	2e-24	988 - 1047	100	60 / 60	plus	ABC00413 ABC00685 ABC00901 ABC01003
MLOC	MLOC_29799.1	863	2e-24	549 - 608	100	60 / 60	minus	ABC00413 ABC00536 ABC00575 ABC00685 ABC00901 ABC01003
MLOC	MLOC_360.3	3683	2e-24	2419 - 2478	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.8	2391	2e-24	1127 - 1186	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.4	3241	2e-24	1977 - 2036	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.9	1673	2e-24	309 - 368	100	60 / 60	minus	ABC00413 ABC00575 ABC00626 ABC00685 ABC00901 ABC01003
MLOC	MLOC_360.1	3612	2e-24	2248 - 2307	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.2	3954	2e-24	2590 - 2649	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.5	2457	2e-24	1193 - 1252	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.6	2927	2e-24	1663 - 1722	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.7	2629	2e-24	1292 - 1351	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	AK356124	2429	7e-23	1108 - 1167	98	59 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1	JLOC1_27423.1	1079	8e-25	988 - 1047	100	60 / 60	plus
JLOC1	JLOC1_19789.1	863	8e-25	549 - 608	100	60 / 60	minus
JLOC1	JLOC1_229.2	3541	8e-25	1272 - 1331	100	60 / 60	plus
JLOC1	JLOC1_229.1	3199	8e-25	1272 - 1331	100	60 / 60	plus
JLOC1	JLOC1_22706.1	243	6e-21	188 - 243	98	55 / 56	plus
Harvest21	ABC01003	2033	3e-25	1446 - 1505	100	60 / 60	minus	ABC01003
Harvest21	ABC00901	2854	3e-25	1408 - 1467	100	60 / 60	plus	ABC00901
Harvest21	ABC00896	1776	3e-25	1417 - 1476	100	60 / 60	plus
Harvest21	ABC00860	2000	3e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC00677	1978	3e-25	526 - 585	100	60 / 60	plus
Harvest21	ABC00685	2872	1e-23	1318 - 1377	98	59 / 60	plus	ABC00685
Harvest21	ABC00413	2889	1e-23	1426 - 1485	98	59 / 60	plus	ABC00413
Harvest35	U35_28305	625	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_483	2975	3e-25	1458 - 1517	100	60 / 60	plus
Harvest35	U35_373	2860	3e-25	1408 - 1467	100	60 / 60	plus
Harvest35	U35_393	2961	1e-23	1442 - 1501	98	59 / 60	plus

Contig Sequence (625 bp)

>U35_28305 625 Hv_44K_v2
GGAGAACTTCTTTGACCCAGCCACAAAGAAATGGACCTCTAAGAACACTGGGACAGCTAC
CTGCAAGAGGGGTTTTGTTCAGTTCTGCTATGAGCCAATCAAGCAAATCATAGCCACCTG
CATGAATGATCAGAAGGATAAGTTGTGGCCTATGTTGAAGAAGCTTGGTGTGACCATGAA
GAATGATGAGAAGGACTTGATGGGCAAGGCTCTCATGAAGCGTGTGATGCAAACTTGGCT
GCCTGCCAGTCGCGCTCTGCTTGAGATGATGATATTTCACCTCCCCTCTCCTTCAAAGGC
GCAGAGGTATCGTGTGGAGAACTTGTATGAGGGACCCCTTGATGATATATATGCAAATGC
TATCAGGAACTGTGACCCAGATGGTCCTCTTATGTTGTATGTTTCCAAGATGATTCCAGC
ATCTGACAAGGGTAGATTTTTTGCCTTTGGACGTGTTTTTGCTGGGAGGGTTGCAACTGG
CATGAAGGTCCGTATCATGGGTCCCAACTTTGTTCCTGGCCAGAAGAAGGATCTGTATGT
GAAGAGTGTCCAGCGTACTGTTATCTGGATGGGAAAGAAGCAAGAGTCTGTTGAGGATGT
TCCCTGTGGTAACACTGTTGCGTTG

Homology of Contig U35_28305 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02820.3	652	5e-125	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844	7e-128
Arabidopsis v10	AT1G56070.1	843	1e-119	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843