barSeed - Barley Seed Development Database

Probe CUST_287_PI390587928

Source Contig U35_32032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_287_PI390587928	Hv_44K_v2	TTTGAAGCTGCCGGATTGGTAGCTCGTAGCTGGGAGGTTCCGGGGGTCGATGGGGAAAGG	75	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369689	1661	2e-24	198 - 257	100	60 / 60	plus	ABC05841 ABC05842 ABC09252
MLOC	MLOC_53640.1	1232	2e-24	986 - 1045	100	60 / 60	minus	ABC05841 ABC05842 ABC09252
MLOC	MLOC_53640.3	1242	2e-24	997 - 1056	100	60 / 60	minus	ABC05841
JLOC1	JLOC1_34479.1	1216	8e-25	172 - 231	100	60 / 60	plus
Harvest35	U35_32032	426	3e-25	76 - 135	100	60 / 60	plus

Contig Sequence (426 bp)

>U35_32032 426 Hv_44K_v2
GCAGCTTGCACACGTCCGGCACAAGAGAGCGAAACAGCAGCAGCAGAGACCTAGCCATCG
GCGGCGAGCTAGCTGTTTGAAGCTGCCGGATTGGTAGCTCGTAGCTGGGAGGTTCCGGGG
GTCGATGGGGAAAGGCCGGGCACCGTGCTGCGCCAAGGTGGGGCTCAACAGGGGCTCCTG
GACGCCGGAGGAGGACATGCGCCTCATCGCCTACATTCACAAGTACGGCCACGCCAACTG
GCGCGCCCTCCCCAAGCAAGCAGGCTTGCTCCGTTGCGGCAAGAGCTGCCGGCTCCGGTG
GATCAACTACCTCCGCCCGGACCTCAAGCGCGGNCACTTCACCCTCATCAAGCTGCACAC
ATGCTCNGGCACAGTGGTCCAGATCGCGCGTGCCTGCCGGGAGGACGGACACGAGATCAG
ACGTCT

Homology of Contig U35_32032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None