barSeed - Barley Seed Development Database

Probe CUST_28581_PI390587928

Source Contig U35_5151

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28581_PI390587928	Hv_44K_v2	TAGCAGTAGTAGCTAGTAGGAGGTGGAAGTTCATCGATTGTAGCAGAATGCTTGGTGACT	869	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373999	1880	2e-24	1795 - 1854	100	60 / 60	plus	ABC09264 ABC12547 ABC26240
MLOC	AK375292	2079	2e-24	1715 - 1774	100	60 / 60	plus	ABC09264 ABC12547 ABC26240 ABC47626
Harvest21	ABC12546	1157	3e-25	870 - 929	100	60 / 60	plus
Harvest35	U35_5151	1224	3e-25	870 - 929	100	60 / 60	plus

Contig Sequence (1224 bp)

>U35_5151 1224 Hv_44K_v2
GCGCTGCACACTACTTCTCCTCAGTGGTTGCTTCTATTCTGGAAAACTTTGGCTTGAGTG
AGGAGATGCACAATCCTGTGTCAATCTTCCTGCTGGTAGCAGTTGTCTTGACTGGAGCTG
GTTTTGGCTATTGGATGGTGAGGAGATATATCATTTCAAAAGATGGCTGTGTTGATGCCG
GGATAGCACAGTTTGTCAAGTGGGCTATGCGTGTTGTTGGAATGTTCTTTGTTATGCAGA
GCACACTCGACCCTATTCTAGCATTCGCTGCTCTAGCTGCTACCTCGTGGGTTTGCTCTG
TATTGACAACAAAGAAAGTTCACAAGCCAACGGCACCGAAGCGAAAACAATCAAATGTTT
CTTCTCATCCAAGGTTTACTCAAGTATCACCGAACACTCGCCAGGTCCAGTTCTTAAGTC
CATCATCAAGGGCGGGTACTGGAAGAGCCACAACAACACAGTATGGTTGGAACTATTTAG
CCAATGGAGGTCTGGCCTCCTCAGCACTGGTAAAGAGGCTAGCACCCAATCAAGACGAAG
ACTACTACTCCACCTTCCACAACATCGAACCACGGAAGTACTCAAAGAGAGAATGGGAGG
AGTTCACCGAGGAATCGACCAGAAACGCACTGATGGAGCACACAGCCACCCCAGAGTTTG
CCCAATGGGCTGCTGACAACGCTCACCGGCTGCGGGTGGAGCGGGACGACTCGTCCGAGG
ACGAGTCGATCGAGACCTCCTCAGGCTCTTCCGAAGAGGCCGAGAAAGGCGGAAAAGCTT
CTAGTCTGTTGGGCAGGTTCATGTGATATCGTCACCCGACTAAAGCTGCTTTTGCGGACG
ATGTGTATAAGGTAGGATTGGGAACTTGGTAGCAGTAGTAGCTAGTAGGAGGTGGAAGTT
CATCGATTGTAGCAGAATGCTTGGTGACTGTGGGCTGTTAGCTGGTTGGTTAACCACCGT
CATCCATCTCAATTCGACAACTGATGTTAGGTTTAGCCGGCAGTCTGCCATCCATGGATC
TTTAAGTTTTAGCCGATGCATCAGGGGACATGGGCCGGTGCCATTCGATGGATTAGGGAC
CTTCGATCCTGTCGGGATCTTGCCATTGTCTTGTTGAACATCTCATGTTTCATTCTCACG
TGTGTGAGGGTAGCATTTCAAGGATCTTTATCTGTTGTTAGACGGGCATGTAAACCAGAT
TGTTGGGCACAAAAAAAAAAAAAA

Homology of Contig U35_5151 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45180.2	412	1e-112	protein\|expressed protein
Brachypodium v1_2	Bradi1g13430.1	426	8e-129
Arabidopsis v10	None