barSeed - Barley Seed Development Database

Probe CUST_28580_PI390587928

Source Contig U35_5152

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28580_PI390587928	Hv_44K_v2	ATGTAAACCAGATTGTTTGGGCATGTAGATCAACTGGAGTTGGTTGCTGTAAACCGTTCG	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38387.1	1984	2e-24	1914 - 1973	100	60 / 60	plus	ABC09264 ABC12547 ABC26240 ABC47626
JLOC1	JLOC1_24956.1	2160	8e-25	1914 - 1973	100	60 / 60	plus
Harvest21	ABC12547	653	3e-25	55 - 114	100	60 / 60	minus	ABC12547
Harvest21	ABC47626	389	1e-23	60 - 119	98	59 / 60	minus	ABC47626
Harvest35	U35_5152	653	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_46938	389	1e-23	60 - 119	98	59 / 60	minus

Contig Sequence (653 bp)

>U35_5152 653 Hv_44K_v2
CCCAATGGGCTGCTGACAACGCTCACCGGCTGCGGGTGGAGCGGGACGACTCGTCCGAGG
ACGAGTCGATTGAGACCTCCTCAGGCTCTTCCGAAGAGGCCGAGAAAGGCGGAAAAGCTT
CTAGTCTGTTGGGCAGGTTCATGTGATATCGTCACCCGACTAAAGCTGCTTTTGCGGACG
ATGTGTATAAGGTAGGATTGGGAACTTGGTAGCAGTAGCTAGTAGGAGGTGGAAGTTCAT
CGTCTCCACGCGGTTCGCCATTGCGGCAGAATGCTTGGTGACTGTAGGCTGTTAGCTGGT
TGGTTAACCACCGTCATCCATCTCAATTCGACAACTGATGTTAGGTTTAGCCGGCAGTCT
GCCATCCATGGATCTTTAAGTTTTAGCCGATGCATCAGGGGACATGGGCCGGTGCCATTC
GATGGATTAGGGACCTTCGATCCTGTCGGGATCTTGCCATTGTCTTGTTGAACATCTCAT
GTTTCATTCTCAGGTGTGAGGGTAGCATTTCAAGGATCTTTATCTGTTGTTAGCCAGGCA
TGTAAACCAGATTGTTTGGGCATGTAGATCAACTGGAGTTGGTTGCTGTAAACCGTTCGC
TGGACCCACACACACACAAAAAAAACCGTTTTTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None