barSeed - Barley Seed Development Database

Probe CUST_28563_PI390587928

Source Contig U35_12064

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28563_PI390587928	Hv_44K_v2	TGAAGCCTATATGCAAAGAGTCTCATATCATAGTAGGCATATTTGAGTTGTAGTAGTGTA	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31595.1	422	2e-24	194 - 253	100	60 / 60	plus	ABC15824 ABC15825 ABC18126
MLOC	MLOC_31594.1	908	2e-24	699 - 758	100	60 / 60	plus	ABC15824 ABC15825 ABC18126
MLOC	MLOC_31594.2	1186	2e-24	958 - 1017	100	60 / 60	plus	ABC15824 ABC15825 ABC18126
JLOC1	JLOC1_20727.5	920	8e-25	699 - 758	100	60 / 60	plus
JLOC1	JLOC1_20727.4	422	8e-25	201 - 260	100	60 / 60	plus
JLOC1	JLOC1_20727.3	594	8e-25	373 - 432	100	60 / 60	plus
JLOC1	JLOC1_20727.2	607	8e-25	386 - 445	100	60 / 60	plus
JLOC1	JLOC1_20727.1	1179	8e-25	958 - 1017	100	60 / 60	plus
Harvest21	ABC21496	564	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_12064	564	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_12064 564 Hv_44K_v2
ATTTAGCATCATTGCCAAAGATGTGGAGGCCTCTTCTGCAGCAGTTAGACCCAGCAGAGG
GTGGTATTACGTGGACAGGGTGACTCACCTGTTCGAATGTGTGATCCTTGCAAAAAACTC
GAGGAAGCAGCACGCTATGAGTTGAGATACGGACACAAAAATAGAGTCGGGAAAGGTCAA
TTTATTTCCATGCGCTTTCAATCAAATTTGTTTCTCATCAAAGGAATTATGATTTGATTG
ATACTTGATACATCTAAAAGTGGCGAGTCGTGCTTGATTAAAAATTAATCTGTTTGTCAG
CATTGGACACAATTGCTTTTGTATTATACAACCTTCCCAACCAGCACACATTAGGGCACT
TGTTTACAGTCGAGCTGCAGGGCTACTATTTTGTTCCCTCATTGGCTACTATTTTGTTCT
TATTTTTTGCATAGGTGAAATGTGAAGCCAAGCGTGAAGTCATGAAGCCTATATGCAAAG
AGTCTCATATCATAGTAGGCATATTTGAGTTGTAGTAGTGTAAAGAATGTAATAGACTAA
TTTAGTGTTTTTTTGGATGAATTT

Homology of Contig U35_12064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None