barSeed - Barley Seed Development Database

Probe CUST_28432_PI390587928

Source Contig U35_42517

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28432_PI390587928	Hv_44K_v2	GGCCGATCATTTTATTCTCCGAACTTAGGAAGACGTCAGAAACTTGGTGATGGTCTGGAA	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250484.1	3791	2e-24	1433 - 1492	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	AK250313.1	3742	2e-24	1403 - 1462	100	60 / 60	plus	ABC06398 ABC19284 ABC38126
MLOC	MLOC_44562.1	1041	7e-23	718 - 777	98	59 / 60	minus	ABC06398
JLOC1	JLOC1_28886.1	1209	4e-23	265 - 324	98	59 / 60	plus
Harvest21	ABC38225	617	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_42517	617	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_42517 617 Hv_44K_v2
GCCAGAGATTACATCACGTGGTGTCAATCGTGCTGTGATGGCAGAACTTGTTAGGCTGTA
TAGACATTCTCATTTGGATGGACGGCTACCTGCCTATGATGGAAGGAAGAGCCTATATAC
GGCTGGGCCATTGCCATTTCCTTCAAGGACATTTGAAATTACTCTGCACGATGAAGAAGA
AAGCCTTGGTAGTGGTCAAGTCGCACCAAGGCGTGAGAGACAATTCAGGGTGGTGATCAA
GTTTGCTGCTCGTGCTGATCTCCACCATTTGGCTATGTTTCTAGCTGGAAGGCAACCTGA
TGCACCCCAAGAAGCTCTTCAGGTGCTTGACATTGTGCTGCGTGAACTGCCTACTGCCAG
GTATTCTCCAGTTGGCCGATCATTTTATTCTCCGAACTTAGGAAGACGTCAGAAACTTGG
TGATGGTCTGGAAAGCTGGCGTGGATTTTACCAAAGTATAAGACCTACGCAGATGGGGCT
TTCGTTGAATATTGATATGTCTTCTACTGCATTTATCGAGCCTCTTCCTGTGATTGATTT
TGTTGCTCAGCTTCTGAGCAGAGACATCTCAGTTAGACCCCTATCTGATTCAGATCGTGT
GAAGATTAAAAAAGCCC

Homology of Contig U35_42517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47870.2	1102	2e-119	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.3	1017	1e-127
Arabidopsis v10	AT1G48410.2	1050	2e-96	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050