barSeed - Barley Seed Development Database

Probe CUST_2840_PI390587928

Source Contig U35_10844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2840_PI390587928	Hv_44K_v2	CACAATCACTTGAGTTTACTGTTTTTGCAGTGTCAAATCATCCATCATTGACACCTAAAA	743	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44795.5	1880	7e-23	875 - 931	100	57 / 57	minus	ABC21951 ABC36259
MLOC	MLOC_44795.4	1779	7e-23	875 - 931	100	57 / 57	minus	ABC21951 ABC36259
JLOC1	JLOC1_29060.3	3957	4e-23	1233 - 1289	100	57 / 57	minus
JLOC1	JLOC1_29060.2	3957	4e-23	1233 - 1289	100	57 / 57	minus
JLOC1	JLOC1_29061.1	4715	4e-23	2546 - 2602	100	57 / 57	plus
JLOC1	JLOC1_29060.1	6930	4e-23	4206 - 4262	100	57 / 57	minus
Harvest21	ABC21951	816	3e-25	14 - 73	100	60 / 60	minus	ABC21951
Harvest35	U35_10844	816	3e-25	744 - 803	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_10844 816 Hv_44K_v2
GATGGTTTCTGCTGTTGCGCATGCTTCTCAGCGTGTTCATTCGACGTCCTTGGGCTCCTC
TTCTTTTGTTGGTGATCCTGATGGGGGTTGCTGGGGTTGGCTGTCGATGGTGGTTCTATT
CCTGGCTTGAGGGCTGATGAGGCGGACGCCGCCGCCAGGATCGGATGCGGCTCCTTCGTC
GTCTTCCTAGGACGCCCTCCCTTCATCTCCTCTTCGTCGGGTCATCAACCATCGAGTAGG
GAGGTGCACACATAGGCCATGGCTGATTGAGGAGGAACTTGCTTCGGTGGGCTGTAGTGG
CGGCTTGGATTTCCTTCTCCCGAGGCGACACGGTGTTCCTCAACCCAAATGTTTCCCTGA
GGAGCACCACCATGCCTCACCATCGGACGCATCACTGCAAGTACCACCACCACAATAATA
TGTCGGTCCTTCATTTCCCCATCACCTACTAGCCAAGGTCCACCTCTGGGTAAGCTCCTT
TGGGTTCAGTTATGGCTTCTCAAGCACGCTAGATTTTTCCCGTGATTTCTTTTTTCATGA
TAGACCTGCGTTTTGTGGCGGAGTAGCATAAAAATTTCTATTTCTTCACTAGTTTACTTG
CCGAAGGTTAGATTGCAAGAGGTGGCAAGCCGGTAGGAGGTAACCTCGAAATCAGCGACA
GTGAGCCGGTGACGACGGTGGTTGACACAATGGCCGAGGGAAATTTTCAATTCGTGCTGC
TTTTTTTTCTGAATTATTTGGATCACAATCACTTGAGTTTACTGTTTTTGCAGTGTCAAA
TCATCCATCATTGACACCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None