barSeed - Barley Seed Development Database

Probe CUST_28047_PI390587928

Source Contig U35_25026

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28047_PI390587928	Hv_44K_v2	ATCATTGCCTGAAGTATGTTGCTAGTTGTAAAGAGGACTGGCATGTTCCATATCAAAAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62332.4	1043	2e-24	833 - 892	100	60 / 60	plus	ABC01865 ABC12944
JLOC1	JLOC1_40789.4	1508	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC21336	374	3e-25	15 - 74	100	60 / 60	plus
Harvest35	U35_25026	375	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (375 bp)

>U35_25026 375 Hv_44K_v2
GAGAGATCGACAACATCATTGCCTGAAGTATGTTGCTAGTTGTAAAGAGGACTGGCATGT
TCCATATCAAAAAAAAAAAAAAACCGTAGTAAAAGACAGAGTACGAGGTGGGGATACGGC
AAAGTCCACATCGCACCGGCTGTCGATCGATGACACCAACCCTTCACTTGGTGCCTCTCT
TTAATCCAACAAGCTGGTCACATGCACGACGTACGAACGTCCCCCTCGTTGCTCACGCGT
GTTTGTTCCCATGCGCGCATGCAGTCCGGAGGCCCCCGGTGGCGCGTCCCGCTCGGCCGG
CGCGACGGCACCACGGCCAACATCACCGCCGCCAACAGCCTCCTCCCGAGCCCCCGCAAC
AACCTCACCATGCTC

Homology of Contig U35_25026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None