barSeed - Barley Seed Development Database

Probe CUST_277_PI390587928

Source Contig U35_44015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_277_PI390587928	Hv_44K_v2	AATGCAGAGGGGTCAAAAGACTCAGGTTCCAATGATTTCCCTAAACACACTGCTACTCCA	381	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376099	2296	2e-24	911 - 970	100	60 / 60	plus	ABC25340 ABC40037
MLOC	MLOC_46801.2	1930	2e-24	170 - 229	100	60 / 60	minus	None
MLOC	MLOC_46801.1	658	2e-24	177 - 236	100	60 / 60	minus	None
Harvest21	ABC41416	474	3e-25	382 - 441	100	60 / 60	plus
Harvest35	U35_44015	474	3e-25	382 - 441	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_44015 474 Hv_44K_v2
CAGCCGCCTCGAGCTCTCCCTCGAAAAAAAGAGACCGCCTCCACCACCACCAGCTCTCCA
CTCCGGCGACTCGAGCGTTCCTCTCGCAGAAGGACGGCGGTTCTGATCGGCGGTTGCTAG
CGTCACGTGTAGAATGGCTTCATCTCGCTTATTGGTAAAACTGAAGAGGTGGATATGGTT
TATGCTAAAGCCAAAGGTGTTGCCAGGATGCTGGTTAGTGTCCTAGATATTGAACTAGTT
CCAGATGAGGTTGTTTGGACCTTTGAAGGGATGAGATACACCCTCTAATTGGAGATTGAG
AGTCCTACACTTTTTGATGTCCCTGACTCTGATAAAGATACTCATATGACTGATGGTGAT
GATGCCAGTGGTTCCAAAGATAATGCAGAGGGGTCAAAAGACTCAGGTTCCAATGATTTC
CCTAAACACACTGCTACTCCACAGCAAAACCAGCCTCATCCTGGTAATGATACT

Homology of Contig U35_44015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None