barSeed - Barley Seed Development Database

Probe CUST_27713_PI390587928

Source Contig U35_905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27713_PI390587928	Hv_44K_v2	CCCAGCATGCTACCTGTGGATCAATGTACTTGACCAGTTATTTATAATTTGTGCTTCATA	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2643.2	733	6e-24	653 - 711	100	59 / 59	plus	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
JLOC1	JLOC1_1574.1	585	3e-24	505 - 563	100	59 / 59	plus
Harvest21	ABC42770	367	3e-25	3 - 62	100	60 / 60	minus
Harvest21	ABC01010	582	1e-24	499 - 557	100	59 / 59	plus	ABC01010
Harvest21	ABC00494	1167	1e-24	1090 - 1148	100	59 / 59	plus	ABC00494
Harvest21	ABC00452	464	1e-24	368 - 426	100	59 / 59	plus
Harvest21	ABC00088	465	1e-24	369 - 427	100	59 / 59	plus	ABC00088
Harvest35	U35_905	486	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_906	498	1e-24	383 - 441	100	59 / 59	plus

Contig Sequence (486 bp)

>U35_905 486 Hv_44K_v2
CGGGGAATACTCATATCAGTCAAGCTCAGGGTAAGCTCGATCCCATTTAGCTGCTCGCGG
AATTGAGGATGAGCTGCGCCGCCCCAAAAGCCCCTGCCGGAGAGGAGAAGAAGACGTCAT
GGCCCGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCATCCTTAAGGACATGC
CTGACGCCGACATCTTCGTCATCCCTACCGACTCCTTGGTGACCGCGGACTGGAATAGCA
ACCGTGTCCGCATCATGGTCGACACTGTCGCGTCCACTCCCCACATTGGCTAGCTAGCTT
TGCGAGCAAAGGCAACATGGATGCATTGTGGATGGTGATGAATAAGTACTTCCAATAAGT
ATGGATCAATAAATAGATGCTGACCCCCAGCATGCTACCTGTGGATCAATGTACTTGACC
AGTTATTTATAATTTGTGCTTCATATTATCAAGTAGTACTTTTTTTTTGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None