barSeed - Barley Seed Development Database

Probe CUST_27712_PI390587928

Source Contig U35_906

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27712_PI390587928	Hv_44K_v2	ACCAGCATGCTACCTGTGGATCAATGTACTTGACCAGTTATTTATAATTTGTGCTTCATA	381	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2643.2	733	2e-24	652 - 711	100	60 / 60	plus	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
JLOC1	JLOC1_1574.1	585	8e-25	504 - 563	100	60 / 60	plus
Harvest21	ABC01010	582	3e-25	498 - 557	100	60 / 60	plus	ABC01010
Harvest21	ABC00494	1167	3e-25	1089 - 1148	100	60 / 60	plus	ABC00494
Harvest21	ABC00452	464	3e-25	367 - 426	100	60 / 60	plus
Harvest21	ABC00088	465	3e-25	368 - 427	100	60 / 60	plus	ABC00088
Harvest21	ABC42770	367	1e-24	3 - 61	100	59 / 59	minus
Harvest35	U35_906	498	3e-25	382 - 441	100	60 / 60	plus
Harvest35	U35_905	486	1e-24	387 - 445	100	59 / 59	plus

Contig Sequence (498 bp)

>U35_906 498 Hv_44K_v2
GGGGACTCATATCAGTCAAGTTCAGGGTAAGCTCGATCACGTTTAGCCGCCTGCCGAATC
GAGGATGAGCTGCGCCGCCCCAAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCC
GGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCATCCTTAAGGACATGCCTGA
AGCGGACATCGTCGTCCTCCCAGCCGGCTCGCCGGTGACCCTCGACTTCAGGACCAACCG
TGTCCGCATCTTCGTCGACACTGTCGCGTCCACTCCCCACATTGGCTAGCTAGCTTTGCA
AGCAAAGGCAACATGGATGCATTGTGGATGCTGATGAATAAGTACTTCCAATAAGCATGG
ATCAATAAATAGATGCTGACCACCAGCATGCTACCTGTGGATCAATGTACTTGACCAGTT
ATTTATAATTTGTGCTTCATATTAAAAAAAAAAAAAAAAATTTTTTTTGAAAAAAAAAAA
AAAAAAAGCCCTGCTTTG

Homology of Contig U35_906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None