barSeed - Barley Seed Development Database

Probe CUST_27678_PI390587928

Source Contig U35_944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27678_PI390587928	Hv_44K_v2	TGTAGATCATATATCCATCACGTACGTTCAGGGACAAACATGTCTCCGGTGAAGGTGTTC	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49314.1	1385	2e-24	1034 - 1093	100	60 / 60	minus	ABC01597 ABC02975 ABC02976
JLOC1	JLOC1_31574.2	1604	8e-25	211 - 270	100	60 / 60	plus
JLOC1	JLOC1_31574.1	1578	8e-25	211 - 270	100	60 / 60	plus
Harvest21	ABC02978	1109	3e-25	1019 - 1078	100	60 / 60	minus
Harvest21	ABC02976	1296	3e-25	47 - 106	100	60 / 60	plus	ABC02976
Harvest21	ABC02975	1249	3e-25	30 - 89	100	60 / 60	plus	ABC02975
Harvest21	ABC02974	523	3e-25	38 - 97	100	60 / 60	plus
Harvest21	ABC37263	117	6e-22	26 - 84	97	58 / 60	plus
Harvest35	U35_945	1229	3e-25	38 - 97	100	60 / 60	plus
Harvest35	U35_944	493	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_943	523	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_944 493 Hv_44K_v2
ACAGAGCAGCAGAGTCTTGTACGTATAGTTGTAGATCATATATCCATCACGTACGTTCAG
GGACAAACATGTCTCCGGTGAAGGTGTTCGGGCACCCGATGTTGACAAACGTGGCACGGG
TGATGCTCTTCCTGGAGGAGGTCGGCGCCGAGTACGAGCTCGTGCCCGTGGACTTCGTCG
CCGGCGAGCACAAGAGGCCCCAACACCTCCAGCTAAACAGATGCTACGTGTTTTCCTCTT
GCAGCCGTTCGGGCAGATGCCTGGGTTCCAAGATGGCGATCTCGTCCTGTTCGAGTCGCG
CGCCATCGGCAAGTACATCATCCGCAAGTACGGGACAGCCGGGCTGGACCTCCTCGGAGA
AAACAGCGGAATCGAAGAATCAGCAATGGTGGACATGTGGACGGAGGTGGAGGACCAGCA
GTACTACCCGGCCATCTCGCCCGTGGTGTTCGAGTGCATCATCAATCCCTTCATCATGGG
TGGCGCGGCGACG

Homology of Contig U35_944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None