barSeed - Barley Seed Development Database

Probe CUST_27677_PI390587928

Source Contig U35_945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27677_PI390587928	Hv_44K_v2	ATACTTTTATATTAGTTTATAGAGGGAGCAGATGTTTATGAGCGCGGGTGTGTGTGTGTG	894	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49314.2	913	2e-24	165 - 224	100	60 / 60	minus	ABC01597 ABC02975 ABC02976
MLOC	MLOC_49314.1	1385	2e-24	177 - 236	100	60 / 60	minus	ABC01597 ABC02975 ABC02976
JLOC1	JLOC1_31574.2	1604	8e-25	1094 - 1153	100	60 / 60	plus
JLOC1	JLOC1_31574.1	1578	8e-25	1068 - 1127	100	60 / 60	plus
Harvest21	ABC02975	1249	3e-25	913 - 972	100	60 / 60	plus	ABC02975
Harvest21	ABC02978	1109	4e-24	164 - 221	100	58 / 58	minus
Harvest21	ABC02977	549	2e-22	304 - 361	98	57 / 58	plus
Harvest21	ABC02976	1296	2e-22	836 - 893	98	57 / 58	plus	ABC02976
Harvest35	U35_945	1229	3e-25	895 - 954	100	60 / 60	plus
Harvest35	U35_946	549	2e-22	304 - 361	98	57 / 58	plus
Harvest35	U35_942	1199	2e-22	739 - 796	98	57 / 58	plus

Contig Sequence (1229 bp)

>U35_945 1229 Hv_44K_v2
CAGCTTGTACAGAGCAGCAGAGTCTTGTACGTATAGTTGTAGATCATATATCCATCACGT
ACGTTCAGGGACAAACATGTCTCCGGTGAAGGTGTTCGGGCACCCGATGTTGACAAACGT
GGCACGGGTGATGCTCTTCCTGGAGGAGGTCGGCGCCGAGTACGAGCTCGTGCCCGTGGA
CTTCGTCGCCGGCGAGCACAAGAGGCCCCAACACCTCCAGCTAAACCCGTTCGGGCAGAT
GCCTGGGTTCCAAGATGGCGATCTCGTCCTGTTCGAGTCGCGCGCCATCGGCAAGTACAT
CATCCGCAAGTACGGGACAGCCGGGCTGGACCTCCTCGGAGAAAACAGCGGAATCGAAGA
ATCAGCAATGGTGGACATGTGGACGGAGGTGGAGGACCAGCAGTACTACCCGGCCATCTC
GCCCGTGGTGTTCGAGTGCATCATCAATCCCTTCATCATGGGTGGCGCGGCGACGAACCA
GAAGGTGGTCGACAAGAGCCTGGAGAGGCTCAAGGGTGTGCTGGGGATCTACGAGGCCCG
GCTGGAGAAGAGCAGGTACTTGGCCGGGGACTCCATCAGCTTCGCCGATCTCAACCACAT
CCCATTCACCTTCTACTTCATGACCACCCGGCACGCGTCGGTGTTTGATGACTACCCCAA
GGTGAAGGCCTGGTGGGAGAGCCTCATGGCCAGGCCGGCGGTGCAGAGGGTGTGCAAGCA
TATGCCTAGCCAGTTTAGCTGCCTACTAACCACTACGCCCTCCATAAACTAAACTAATAT
GAAAGCTTTTACATTACTATAACTATTTTAGTCTAGTGATCTATAAACGCTTTTATATTA
GTTAACTAATATAAGAGCTTTTAGATCACTAACTATTTTAGTGTAGTGATCTAAATACTT
TTATATTAGTTTATAGAGGGAGCAGATGTTTATGAGCGCGGGTGTGTGTGTGTGCCGGTG
ATGATTCCGTTTTAGAGAAAGAGACATCGATCCCGTGGGTCATCATCAGAACTAGCCCGC
TTGCGCTTCTGTTCGTGCGAGCGAGCCTGATTGTGATTGATGTACCTACTTAGATTCCTT
GCTTTGTGCACTAGTACCGGTAAATAAACAACTCGTCAATGCTAATCCGTACGTCCTATA
TGTATAGTACACCACTAGAGATCACAATGGATCCAAAGTCAAAGCAACTATATATATACC
GTACATCTTTGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27260.1	219	3e-97	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g13110.1	220	5e-96
Arabidopsis v10	AT3G62760.1	219	4e-60	\| Symbols: ATGSTF13 \| Glutathione S-transferase family protein \| chr3:23217425-23218246 REVERSE LENGTH=219