- Probe CUST_27531_PI390587928
- Source Contig U35_28438
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27531_PI390587928 | Hv_44K_v2 | CTGTCAAGCCTCGTTCACAGTCCTATGTAAACAAGGTAAAAGGAGAATTGGAGAGCATGG | 158 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.943 | 0.805 | 0.764 | 0.569 | 1.303 | 1.160 |
| Raw | 3.181 | 3.922 | 4.297 | 4.177 | 3.394 | 3.239 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355313 | 2886 | 2e-24 | 705 - 764 | 100 | 60 / 60 | plus | ABC09600 ABC09601 ABC15584 |
| MLOC | MLOC_57938.1 | 2281 | 2e-24 | 1579 - 1638 | 100 | 60 / 60 | minus | ABC09600 ABC09601 ABC15584 |
| MLOC | MLOC_57938.2 | 2284 | 2e-24 | 1582 - 1641 | 100 | 60 / 60 | minus | ABC09600 ABC09601 ABC15584 |
| MLOC | MLOC_57938.4 | 1055 | 2e-24 | 259 - 318 | 100 | 60 / 60 | minus | ABC09601 |
| JLOC1 | JLOC1_37620.5 | 652 | 8e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37620.4 | 3081 | 8e-25 | 648 - 707 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37620.3 | 2928 | 8e-25 | 648 - 707 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37620.2 | 2931 | 8e-25 | 648 - 707 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37620.1 | 2996 | 8e-25 | 549 - 608 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27307 | 723 | 3e-25 | 159 - 218 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28438 | 723 | 3e-25 | 159 - 218 | 100 | 60 / 60 | plus |
Contig Sequence (723 bp)
>U35_28438 723 Hv_44K_v2 GTATTCCCTATCGTTTCAAGAGGCTTATCTTATTCCAGTCTGCACAGGCATGTGGTCATG TTCACCACAAGATGTTTTGAGCCTGTCTGCTTTCTTTGTCCTGTCATTTTGCCGAAACAA TGGCCTTCTTCAGCTGTTTCGTCACACCCAGCTGCCCACTGTCAAGCCTCGTTCACAGTC CTATGTAAACAAGGTAAAAGGAGAATTGGAGAGCATGGGCTGTCTAATTAAAACCAGCTG TCGGGTCAAATCTGTCTCAAGCCTTTATGACGGAGCTGGCTACAGAGTCTTGGAGAATGA TGGTTCAGAGGAGACATACGACAGTGTCATCCTTGGGGTCCATGCACCCAATGCTCTCAA AGTGCTAGGAGCTGAAGCTACACATCATGAACTGCGAATTCTAGGTGCTTGTCAGTATGT CCAAAGGGATATATACCTCCATTGTGATAAAAATCTGATGCCCCGAAATTCGTCGGCATG GAGCGCGTGGAATTTCCTGGGGACAACTAGTAGGGGATTTTCTGTTACTTACTGGCTAAA CCAAATTCAGAAAATTAAATCTGTCATGCCTTTCCTGGTGACACTCAATCCCCCTTGTGT TCCGAATCATGTACTGCTTAAATGGAATACAAGCCTTCTTGTTCCATCTATGGCCGGNGC GAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGAGGAATATGGTTCTGTGGGGC ATA
Homology of Contig U35_28438 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g16650.2 | 795 | 1e-91 | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| Brachypodium v1_2 | Bradi5g02490.1 | 795 | 6e-111 | |
| Arabidopsis v10 | AT3G23510.1 | 867 | 2e-82 | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |