barSeed - Barley Seed Development Database

Probe CUST_27394_PI390587928

Source Contig U35_6796

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27394_PI390587928	Hv_44K_v2	GTAACTCATTTCTTCCTCTTGGTAAGAACATGTTGTGCCATTATAACAGATGCATTAAGA	1395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55522.1	2882	2e-24	38 - 97	100	60 / 60	minus	ABC01920 ABC06886 ABC06888 ABC37591 ABC40027 ABC43138
JLOC1	JLOC1_35827.1	6392	8e-25	6256 - 6315	100	60 / 60	plus
Harvest21	ABC37591	539	3e-25	29 - 88	100	60 / 60	minus	ABC37591
Harvest35	U35_6796	1483	3e-25	1396 - 1455	100	60 / 60	plus

Contig Sequence (1483 bp)

>U35_6796 1483 Hv_44K_v2
CCGCGATCGGCGACGGCCAAGCAGGAGGAGGCCAACGCGGCGCTGGGCGCCGACGGGTCC
CGGCCGTTCACCGCGCGGGAGCTCCTCGGCGAGATCAAGGAGGACGGCGAGGCGGACGGG
GGCGGAGGCGTTGGGGACGGGGGCGGATCCGCCGATGCCGAGGGTCCTTCGTCCAGCCAA
GAGAGCATGCAGCAGTTTTCATCCCATCATGATGTAGCCATGGAATTAATAAACAGTGTC
ACTGGAGTTGACGACGAAGGTCGTTCTCGCCAAAGGATTCTTTCTTTTGCTGGAAAAAGA
TATCTAAATGCAATTGAAAGAAATCCTGATGACCCTGATGCATATTATAATTGGGCCCTA
GTCCTCCAGGAGAGTGCAGATAATGTGGACCCCAATTCTGGTTCCTCCAAAGACGCGTTA
CTTGAGGAGGCTTGCAAAAAGTATGCCGAAGCTACCCGACTTTGCCCGACTCTTTATGAT
GCATACTATAACTGGGCCATTGCTATTGCTGATCGAGCTAAAATCCGAGGTCGTACCAAA
GAAGCCGAAGATCTCTGGAAACAGGCAATACTGAATTATGAGAAGGCTGTTCAGCTAAAT
TGGAATAGCCCACAGGCTCTGAATAATTGGGGTCTTGGATTACAGGAACTGAGCGCCATT
GTTCCTGCTCGGGAGAAACAAACCATTATAAAAACAGCTATAATACGGTTTAGCTGAGGA
TACCATGAGATCTGGGAGACCAGACGTATCCCCTAATGAGCTTTACAGTCAGTCTGCTAT
TTATGTTGCAGCTGCTCACGCATTGAAACCAAATTACTCGGTCTATCGCAGTGCTTTGCG
ACTAGTCCGCTTGATGTTGCCTTTGCCATACCTCAAAGTGGGATATTTGACTGCTCCTCC
AGCCAACAATGCCATTGCACCACACAAAGATTGGGTGAGATCACAATTTGTTCTGAACCA
TGAGGGACTCCAGCAGGCCGATGCCTCTGGACAGCCTGCATCAGATGGTCATATGGACAG
AGGAAGAAAGTCTACCCGAATAGCTGTCGAGGATATTGTTTCTGTGTCAGCATCCGCTGA
TCTAACATTGCCACCTGGTGCTGGCCTTTGTGTAGATACTATTCATGGACCTAGGTTCTT
GGTTGCTGATAGCTGGGAGGCTCTTGACAGTTGGCTAGATGCTTTATGCCTAGTCTACAC
TATATATTCAAGAGGGAAAAGTGACGTTCTTGCTGGTATTATTACTGGCTAATATGTTAT
ACAGGAAAAACTGCACAACGAATAGAGGCTCAGAGATTGCGTAGGCTCATTGTCAATTCA
TCCTCTTGTTGATTCACCTGTGTTGATTTATCTCATGGCATATGTAAAGCAGAGACGTAG
AAAAGATGTTGATTGGTAACTCATTTCTTCCTCTTGGTAAGAACATGTTGTGCCATTATA
ACAGATGCATTAAGAAANNNNNNNAAAAAAAAGGAAAAAAAAA

Homology of Contig U35_6796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37430.1	473	1e-177	protein\|expressed protein
Brachypodium v1_2	Bradi3g31090.1	486	0.0
Arabidopsis v10	AT5G41950.1	565	4e-137	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:16785825-16789360 FORWARD LENGTH=565