barSeed - Barley Seed Development Database

Probe ABC01920

Source Contig ABC01920

barSeed

Links

Affymetrix Source Sequence (796 bp)

>ABC01920 796
GCGGGGGCGCTGTCCAAAGCGCGTGATCCATTTCCTCCGTCCTCGCTCGGTGCGCGCGCC
ACTCCGCCGGCCCGTCCCCCTCGCCGGCGACTTCTCGCCCTCCTCGCGGCCGCCCCCAGG
CAGGCAGAGCGTGTTGCGACTTGCGAGCCATGGCCGGCGACAAGAAGGTGTTCGGCTTCG
AGGAGGTCGCCAAGCACAACGTCACCAAGGACTGCTGGCTCGTCATCGCCGGCAAGGTGT
ATGATGTCACCCCTTTCATGGATGAGCATCCTGGTGGAGATGAGGTGCTGCTGGCAGTAA
CCGGGAAAGATGCAACCAGCGACTTTGAAGATATCGGACACAGTGATTCCGCAAGGGAGA
TGATGGAGAAGTACCACATCGGAGAGATTGATGCTTCAACCATCCCAGCAAAGCGTACAT
TTGTACCTCCTCAACAAGGGTCCCATGTCCAGGCCAAGGATAATGACATCCTCATCAAGA
TCCTGCAGTTCCTTGTTCCCATTTTTATATTGGGTCTTGCATTTGGTATCCGGCACTACA
GCAAATCTGAGTAGGCTGTTGGTGGCGAGTTGCTTCTGAGAAATAGCTTTCAAGTAACAT
GGTTTGAATTAGAACAACATAATAATGGTATTGGTTGGCTGGTTTCATTTGGTGGCAGTG
TGTTGTCTTATTGATCATACAAGGCACTCTGAATTCCAAACGTCCATATGTATGCCCAGA
TTACTCCAATTATGTTTACATTCTCAACATATGGAGTTTCTACATTAAAAAAAAAAAATG
AAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55521.1	1641	0.0	887 - 1641	99	752 / 755	CUST_21930_PI390587928	ABC01920 ABC43138
MLOC_55521.2	678	0.0	50 - 678	99	626 / 633	None	ABC01920 ABC43138
MLOC_55521.5	848	0.0	390 - 848	100	459 / 459	CUST_21930_PI390587928	ABC01920
MLOC_55521.4	756	1e-91	4 - 196	98	190 / 193	CUST_21930_PI390587928	ABC01920 ABC43138
MLOC_55521.3	254	6e-115	20 - 254	99	232 / 235	None	ABC01920 ABC43138
MLOC_55522.1	2882	2e-54	2024 - 2142	99	118 / 119	CUST_27394_PI390587928	ABC01920 ABC06886 ABC06888 ABC37591 ABC40027 ABC43138