- Probe CUST_27346_PI390587928
- Source Contig U35_23810
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27346_PI390587928 | Hv_44K_v2 | TACATGCAGATTACATGTCGAAACTGGTGAAGATTGCGGATATTGCAAGTGCCGCTTCGA | 364 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.498 | 1.156 | 1.711 | 0.944 | 0.464 | 0.519 |
| Raw | 25.726 | 29.573 | 41.307 | 34.835 | 5.639 | 7.000 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7963.9 | 6183 | 2e-24 | 5531 - 5590 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.10 | 4911 | 2e-24 | 4259 - 4318 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.8 | 5023 | 2e-24 | 4485 - 4544 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.18 | 4741 | 2e-24 | 4078 - 4137 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.15 | 5250 | 2e-24 | 4622 - 4681 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.24 | 1724 | 2e-24 | 1051 - 1110 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.23 | 2248 | 2e-24 | 2007 - 2066 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.22 | 2073 | 2e-24 | 1400 - 1459 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.2 | 5086 | 2e-24 | 4489 - 4548 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.4 | 5709 | 2e-24 | 5112 - 5171 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.21 | 2764 | 2e-24 | 2110 - 2169 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.25 | 874 | 2e-24 | 220 - 279 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_7963.7 | 5610 | 2e-24 | 5039 - 5098 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.12 | 5369 | 2e-24 | 4838 - 4897 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| MLOC | MLOC_7963.13 | 5633 | 2e-24 | 5043 - 5102 | 100 | 60 / 60 | minus | ABC06593 ABC51294 |
| JLOC1 | JLOC1_5273.55 | 1681 | 8e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.53 | 2064 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.51 | 1740 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.49 | 1538 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.41 | 2230 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.40 | 2363 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.37 | 6006 | 8e-25 | 409 - 468 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.36 | 5301 | 8e-25 | 604 - 663 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.35 | 4975 | 8e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.34 | 5505 | 8e-25 | 379 - 438 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.32 | 5285 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.25 | 5705 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.24 | 4811 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.23 | 6018 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.22 | 5135 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.21 | 5719 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.18 | 5227 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.16 | 5184 | 8e-25 | 371 - 430 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.15 | 5016 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.10 | 5791 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.8 | 6312 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5273.6 | 5223 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20280 | 537 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23810 | 537 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus |
Contig Sequence (537 bp)
>U35_23810 537 Hv_44K_v2 ACACGCTATCGCTCCCCTCCTTCCTCCATCCTCCCCCTCCCCTTTCCTCGCCAGATCTGG CGTCGTTGTCGAATCGGGCCAGGCTGACCCGTGTACGTGTTTCCCTGTCCCCAACGAGAG CCTCGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCGAGCTCGC CGATAGGATCCGCAAGGCGCCCGCAGACTACCTGCTGCTGTTTGAGACGGCCGGGTCCGA GGTTCTCGCCAGCCTTAGGTCGAAGGTCGCCGGCGAGACTTGGGAAATGGAGGAGCCTGT CACCGGCGATGTGCAGATCTTCCTATCCTCCAAGGAGAATTGCGTCTCCATGAAATCTAT TGGGTACATGCAGATTACATGTCGAAACTGGTGAAGATTGCGGATATTGCAAGTGCCGCT TCGAGGGTGAAAGCCAAGGCCACTCATGTGACTCTGCTCTGCAAGAACTGCATGAGTGTG AGGACTTTGCTGTGCGCTAGGTGGCGCTATTGTCCCACGGTCGTGTGATCATGTTCC
Homology of Contig U35_23810 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |