- Probe CUST_27296_PI390587928
- Source Contig U35_2737
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27296_PI390587928 | Hv_44K_v2 | AAACTGCAGTGTGATCATAGTTTTGTTACGAAGAAAGAAATGACTGCGTTCCAAATCAAA | 483 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.726 | 2.362 | 0.821 | 0.831 | 1.236 | 1.101 |
| Raw | 9.709 | 19.318 | 6.187 | 8.463 | 2.771 | 3.453 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65278.2 | 1564 | 7e-23 | 1075 - 1135 | 98 | 60 / 61 | plus | ABC06024 ABC06025 ABC06026 ABC26931 |
| MLOC | MLOC_65278.1 | 1553 | 7e-23 | 1075 - 1135 | 98 | 60 / 61 | plus | ABC06024 ABC06025 ABC06026 ABC26931 |
| MLOC | MLOC_65277.1 | 944 | 7e-23 | 783 - 843 | 98 | 60 / 61 | plus | ABC06024 ABC06025 ABC06026 ABC26931 |
| MLOC | MLOC_65278.3 | 1342 | 7e-23 | 918 - 978 | 98 | 60 / 61 | plus | ABC06024 ABC06025 ABC06026 ABC26931 |
| MLOC | MLOC_65277.2 | 947 | 7e-23 | 786 - 846 | 98 | 60 / 61 | plus | ABC06024 ABC06025 ABC06026 ABC26931 |
| JLOC1 | JLOC1_42949.6 | 3870 | 4e-23 | 2776 - 2836 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42949.5 | 5212 | 4e-23 | 4118 - 4178 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42949.4 | 3674 | 4e-23 | 2580 - 2640 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42949.3 | 5441 | 4e-23 | 4347 - 4407 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42949.2 | 2891 | 4e-23 | 1797 - 1857 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42949.1 | 2656 | 4e-23 | 1562 - 1622 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_42948.2 | 1568 | 4e-23 | 889 - 949 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_42948.1 | 1565 | 4e-23 | 886 - 946 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC06026 | 457 | 1e-23 | 31 - 91 | 98 | 60 / 61 | minus | ABC06026 |
| Harvest35 | U35_2737 | 543 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus |
Contig Sequence (543 bp)
>U35_2737 543 Hv_44K_v2 CCGCCACGGCCACCGAGGAGGCGATGCCGCCGCCGGTGAAGACGCCGATCCAGCACACGC CGGACCTCGCCACCGTCGTCACAAGGATCCAGGGCGGGATGCGCTGCAACCTTTACTCCA CCGGGACGGCGGCGACGCCCGTCAGGGCGATGCTCGCCGACGGCGCCGCGGTGGCGTGCC AGGAGCTCAAGAAGAGCCCCGTCTGGCTGCAGTTTGCCCAGGCTTTCCAGGCAGCTTGAT GGGTTGGACGACCCAATCTTCAGTGACACGCCTTGCTCTGCCCAATCTCATCTCATTTCT GTCCAAAACGATGGTGTGTCTGTCACTGTCACGTATGTATAAATCACATCACATTGCACC TTGTGCTGGATCAAGCAGTATCAAAATAAAGCACTCATGTGCAGCCGTTCCATGCTAAAA AAAAAAATTCCAGAGAGGCCATGAGCTCATGTAGGGCGGCGCTGGCATCGATCAAATATA CATAAACTGCAGTGTGATCATAGTTTTGTTACGAAGAAAGAAATGACTGCGTTCCAAATC AAA
Homology of Contig U35_2737 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |