barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27261_PI390587928Hv_44K_v2CATCTCCCAAGGTTTAGTGAATTTCAGTTGTATGCTTAAATATTAGGAAGCCAACATCTT117GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1471.3181.2161.0070.4410.428
Raw 55.05997.32781.091106.63516.61117.252



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36818339262e-242358 - 241710060 / 60plus ABC05266 ABC05267 ABC38521 ABC43763
Harvest21ABC437635703e-25118 - 17710060 / 60minusABC43763
Harvest35U35_452155703e-25118 - 17710060 / 60minus



Contig Sequence (570 bp)

>U35_45215 570 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAGGTTCTGCAACTTCTATTGTATGCGTGTTTTTTCAAACAA
TTTATCGGAAACACAAAAAAAAAAAATATGTTTTAAGTAGGTAGCAGTATGTTTTTGAAG
ATGTTGGCTTCCTAATATTTAAGCATACAACTGAAATTCACTAAACCTTGGGAGATGAAT
TGGAGGTACAGTACAAGAATGGATAAATAGATTTTATTTATATTTTCCACACCCTACACA
TACGACATCGAGAAGCTCGTCATAAATCAAGCTTACAACGGTGATGCCATCATCCGACTT
TTCTGTCTACTTTTCTGTCTTCAGTTGTGCAGTTTTAGATGCCTCGCTTTACATTAATCT
CTCTTGCTGCAGCAGGAATTATTTCAGAGCCAAAATCATTTGCAGAGGGAAAACGCCATC
TGACCTCAAAAGATTTAGAAGTATCTCTTTCTTGAATATGTATACCCCCATTGAAGCTAT
GTATGGTTTCTTTTCTGCTTCCTCCTTCGTTAAGCCGAGGAGAGTGGTGTCAACTTGCAT
TGCTTACAAGTCAGCTCCTCTCGTTTTTTT



Homology of Contig U35_45215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None