barSeed - Barley Seed Development Database

Probe CUST_2699_PI390587928

Source Contig U35_14228

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2699_PI390587928	Hv_44K_v2	CTTGTGTTGTTGTTGTAACTTGTACGATGGGAGCTTAAGTACATTACTTTGTTTCGTAAA	2503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67067.1	4344	6e-24	60 - 118	100	59 / 59	minus	ABC01797 ABC01799 ABC01800 ABC01803 ABC01805 ABC46427
MLOC	MLOC_67067.2	2660	6e-24	45 - 103	100	59 / 59	minus	ABC01797 ABC01799 ABC01800 ABC01803 ABC01805 ABC46427
JLOC1	JLOC1_44240.1	2864	3e-24	2567 - 2625	100	59 / 59	plus
Harvest21	ABC01797	2584	1e-24	2504 - 2562	100	59 / 59	plus	ABC01797
Harvest35	U35_14228	2617	3e-25	2504 - 2563	100	60 / 60	plus

Contig Sequence (2617 bp)

>U35_14228 2617 Hv_44K_v2
GGCTTTCGGTTTCGCCCCAAGCTCTTCTTCCTTCCATCCATCTACAATATAAACGTACGC
TAATTACTACGTAGCGCTAGTGGTAGCTTCCCCCACATCTGTCGTGCTTGTACTGCTCCC
TGCATTGTTTTTGTTCCATCCGTGTAAGTGTAACCTGCAATGGAGTGCGAGACCGGCCTC
GTGGGCTCCCTCAACGGCGATGGCCTCTGCGTCTCTGCCCCCCGCGCCGCCGACCCCCTC
AACTGGGTGAAGACCGCCGAGGAGCTCACCGGGAGCCACCTGGACGAGGTCAAGAAGATG
GTGGCGCAGTTCCGCGAGCCGCTGGTCACCATCGAGGGCGCCTCCCTCGGGATCGCGCAG
GTGGCCGCCGTGGCCGCCGGCGCCGGCGTCGCCAGGGTCGCGCTCGACGAGTCCGCCCGC
GGCCGCGTCAAGGAGAGCAGCGACTGGGTCATGACCAGCATGATGAACGGCACCGACAGC
TACGGCGTCACCACCGGCTTCGGGGCCACCTCCCACCGACGGACCAAGGAGGGCGGCGCG
CTACAGAGAGAGCTCATCAGGTTCCTCAACGCCGGTGCCTTCGGAACTGGCACGGACGGA
CACGTTCTCCCCGCCGAGGCAACACGCGCGGCTATGCTCGTCCGCATCAACACCCTCCTG
CAGGGTTACTCCGGCATCCGCTTCGAGATCCTCGAGGCCATCACCAAGCTGCTCAATGCC
AATGTCACGCCGTGCTTGCCGCTCCGGGGCACCATCACCGCATCCGGTGACCTTGTGCCG
CTGTCCTACATTGCCGGCCTTATCACCGGCCGACAGAACTCTGTTGCGGTGGCCCCTGAC
GGCAGCAAGGTGACCGCTGCTGAGGCGTTCAAGATCGCCGGGATCGAGCATGGCTTCTTT
GAGCTGCAGCCCAAGGAAGGCCTTGCCATGGTGAATGGCACGGCTGTGGGCTCTGGTCTT
GCATCCACTGTGCTCTTCGAGGCCAATGTTCTTTCCGTCCTTGCCGAGGTCTTGTCTGCC
GTGTTCTGCGAGGTGATGAACGGCAAGCCGGAGTTCACTGACCACCTCACCCACAAGCTG
AAGCACCACCCTGGACAGATAGAAGCGGCTGCAATCATGGAGCACATCTTGGAAGGAAGC
TCATACATGAAGCAGGCAAAGAAGCTTGGTGAGCTCGACCCCTTGATGAAGCCAAAGCAG
GACCGTTACGCTCTCCGCACATCACCTCAGTGGCTCGGCCCACAAATTGAAGTTATTCGC
TTTGCCACCAAGTCGATCGAGCGTGAGATCAACTCTGTCAACGACAACCCGCTCATCGAC
GTCTCCCGTGGCAAGGCTATCCACGGTGGCAACTTCCAAGGCACCCCCATCGGTGTCTCC
ATGGACAACACCCGCCTCGCCATTGCTGCTATTGGCAAGCTGATGTTCGCCCAGTTCTCG
GAGCTCGTGAACGACTTCTACAACAATGGCCTGCCTTCCAACCTGTCCGGTGGGCGCAAC
CCGAGCTTGGACTATGGTTTCAAGGGCGCCGAGATCGCCATGGCCTCATACTGCTCTGAG
CTGCAGTTCTTGGGCAACCCGGTGACCAACCATGTCCAGAGCGCGGAGCAGCACAACCAG
GATGTGAACTCACTTGGTCTGATCTCATCCAGGAAGACTGCCGAGGCTATTGACATCCTG
AAGATCATGTCTTCCACGTTCCTGGTCGCCCTGTGCCAGGCGATTGACCTCCGCCACATC
GAGGAGAACATGAAGACAGCGGTGAGGAACTGCGTGATGCAGGTGGCCAAGAAGACCCTG
AGCATGAACAACATGGGCGGCCTCCACATCGCCCGCTTCTGCGAGAAGGATCTGCTGACC
GCGATCGACCGCGAGGCGGTGTTCGCGTACGCGGACGACCCGTGCAGCCCCAACTACCCG
CTGATGCAGAAGCTGCGGGCGGTGCTGGTCGAGCACGCGCTGGCCAACGGCGACGGCGAG
CGCGCCCTGGAGACCTCCATCTTCGCCAAGGTGGCGGAGTTCGAGCAGAACATCCGGGCG
GCGCTGCCCAAGGAGGTGGAGGCCGCGCGCGCGTCCGTGGAGAACGGCACGCCGCTGGCT
CCCAACCGGATCAAGGACTGCCGCTCCTACCCACTCTACCAGTTCGTCCGCGAGGTGTGC
GGCACCGAGTACCTGACCGGCGAGAAGACACGGTCGCCCGGGGAGGAGCTGAACAAGGTG
CTGGTGGCCATGAACGAGCGCAAGCACATCGACCCGCTGCTGGAGTGCCTCAAAGAGTGG
AACGGCGCGCCCCTGCCACTCTGCTGAGCAGTCGACAAGAGAAGGTAACTCCAAAAGAAA
GAAAAGAAAACACGTACACACAAAGTGAATATAGAACTGTTCAAGACTGTGAAGCGGGAG
GTTCATGATATGTCTAAGTTTCATTGTAGTTAAGTTGATGTTACTGCTGTTGTTTTTCCG
CTGCCGCCATGCCATGAGCAGGCGAGGCAGGCAGCCTCTCAAACTTGTGTTGTTGTTGTA
ACTTGTACGATGGGAGCTTAAGTACATTACTTTGTTTCGTAAAAAAAAAAAAAAAAACCG
TGTTATCGCCTTTGTTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g41650.1	719	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi3g49260.1	718
Arabidopsis v10	AT2G37040.1	725	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725