barSeed - Barley Seed Development Database

Probe CUST_26970_PI390587928

Source Contig U35_41496

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26970_PI390587928	Hv_44K_v2	ATATCTACCCGTACTACACGTACACGTTTCAGCCCAACGTGATCGACCTCAACTACGCGA	4	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358814	3387	2e-24	2053 - 2112	100	60 / 60	plus	ABC08262 ABC08885 ABC08886 ABC18116 ABC23510
MLOC	MLOC_80320.6	1063	2e-24	373 - 432	100	60 / 60	minus	None
MLOC	MLOC_80320.5	1824	2e-24	1131 - 1190	100	60 / 60	minus	ABC08262 ABC18116 ABC23510
MLOC	MLOC_80320.2	1975	2e-24	1192 - 1251	100	60 / 60	minus	ABC08262 ABC18116 ABC23510
MLOC	MLOC_80320.4	1755	2e-24	1070 - 1129	100	60 / 60	minus	ABC08262 ABC18116 ABC23510
MLOC	MLOC_80320.3	1728	2e-24	1070 - 1129	100	60 / 60	minus	ABC08262 ABC18116 ABC23510
MLOC	MLOC_80320.1	1917	2e-24	1230 - 1289	100	60 / 60	minus	ABC08262 ABC18116 ABC23510
JLOC1	JLOC1_53480.1	2021	8e-25	729 - 788	100	60 / 60	plus
Harvest35	U35_41496	683	3e-25	5 - 64	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_41496 683 Hv_44K_v2
GTGAATATCTACCCGTACTACACGTACACGTTTCAGCCCAACGTGATCGACCTCAACTAC
GCGACGTTCCGCCCCAACGCTGGCGTCATCGACCCCGTGACTGGCCTCAGGTACTCCAAC
CTCTTCGACGCCCAACTCGACGCCGTGTACTACGCCATGGACAACCTGGAGTCCTCTGCT
GGCAGCGTGCTGCGCACCGCCGTGGGGACGGTGAGCAGAGGAAGGCGCAGCCAGCGGGTG
CCCACCAAGACCGGCGAGTCCGGGTGGTGCTCCTACTGTCCGAACATGGTGGGCGCCACA
AAGGAGAACGCCCAGGCGTTCAACGCCAACCTGATCAAGCGCGTGCGCTCCGGCAACGCC
GGCACCCCGTACCGGCCCGACGCCGACGTCTCCGCCTACATCTTCGCCCTTTTCAACGAG
AACAAGAAGCCCGCCGACGAGCAGAACTTCGGCCTCTTCTACCCGGACGGGCAGCCGGTG
TACCCGGTCGACTTCGGCCCCAGCCCTGCCCCGGGCCCTGCCGCGGGCAGCTGGTGCGTG
GCGAACCCGGCCGTCGGGGATACGCGCCTGCAGGCCGCGCTGGACTACGCGTGCAGCAAC
GGGGCGGACTGCAGCGCCATCCAGCCCGGGAAGCCGTGCTACGAGCCCAACACCATGGTC
GCGCACGCCTCCTACGCCTTCAA

Homology of Contig U35_41496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35350.3	456	5e-69	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25517.1	563	9e-107
Arabidopsis v10	AT4G26830.1	455	2e-53	O-Glycosyl hydrolases family 17 protein \| chr4:13494726-13496487 REVERSE LENGTH=455