barSeed - Barley Seed Development Database

Probe CUST_26813_PI390587928

Source Contig U35_44950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26813_PI390587928	Hv_44K_v2	CGTATGGTTATTTTGGTGGGTTCAAACTATAACATTGTAGATTGATCAGGTTATGCAAAC	51	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363297	4260	2e-24	4147 - 4206	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	AK354976	2543	2e-24	2249 - 2308	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	MLOC_42561.1	1382	2e-24	775 - 834	100	60 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42561.2	1476	2e-24	770 - 829	100	60 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42560.2	985	2e-24	278 - 337	100	60 / 60	plus	ABC04548 ABC04552 ABC43241
JLOC1	JLOC1_27559.2	1468	8e-25	765 - 824	100	60 / 60	plus
JLOC1	JLOC1_27559.1	987	8e-25	278 - 337	100	60 / 60	plus
Harvest21	ABC44255	284	3e-25	72 - 131	100	60 / 60	minus
Harvest21	ABC43241	564	3e-25	52 - 111	100	60 / 60	minus	ABC43241
Harvest21	ABC04548	913	3e-25	806 - 865	100	60 / 60	plus	ABC04548
Harvest35	U35_50737	855	3e-25	294 - 353	100	60 / 60	minus
Harvest35	U35_44950	564	3e-25	52 - 111	100	60 / 60	minus
Harvest35	U35_1858	917	3e-25	807 - 866	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_44950 564 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTTGAAGAAGAGTTTATTCATTAGGACTTTAATGTTTGCATA
ACCTGATCAATCTACAATGTTATAGTTTGAACCCACCAAAATAACCATACGGAAATTTCC
CTCTTATAGGGAACCATTGCTCCAACAGCTGGACTACGCGCCCGCCACCATATCCTCTCT
CGAAGAGGCGCAGAGGTGCACCGCACCGTGCCCGTCGTCTTCCATAGGGTGCATCAACTT
CCCTTCTTGAAAGCACATTCTGAAGGCAGGGCGTGGTGACTCATGTGTGCGTGCAGGTAG
TAAAGGCGGTGGGTGGAGCGGTCAGGTGCATCCATGGATGACTTTCTATAGGTGTTCTTC
AGGAACTCGACAAAGAATGATCATTGTGAGTAAGCATCACAGAAATTTACTTATGTCCAG
GCTCGGAAATGCTCATTGGGGAGGACTGTGCAAACTGAGCTCGCCGTTTGATCTTGAAAT
ATCACGGACCACCACCACCATGGTGGCCCGTGGATCCGCTGTTAATCCTTTCATATCAAC
CAAATTCAGTTCAGCCTCTTTTTT

Homology of Contig U35_44950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None