barSeed - Barley Seed Development Database

Probe CUST_2679_PI390587928

Source Contig U35_14238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2679_PI390587928	Hv_44K_v2	TTCCGGAGCTAGAGCTTCTGCTTATGTAAGTGAAAGGGTATAAATTTTCATGACAAAAAA	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252969.1	1534	7e-23	1427 - 1483	100	57 / 57	plus	ABC01795 ABC01799 ABC01802 ABC01805
MLOC	MLOC_6761.1	383	7e-23	36 - 92	100	57 / 57	minus	ABC01795 ABC01802
MLOC	MLOC_6759.2	3894	7e-23	3548 - 3604	100	57 / 57	minus	ABC01795 ABC01802 ABC08969
JLOC1	JLOC1_4421.1	531	4e-23	185 - 241	100	57 / 57	minus
Harvest21	ABC01802	632	3e-25	11 - 70	100	60 / 60	minus	ABC01802
Harvest35	U35_14238	632	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_14238 632 Hv_44K_v2
CCAGACAATCGACCGCGAGGCAGTGTTTGCGTATGCAGACGACCCTTGCAGCGCCAACTA
CCCTCTCATGAAGAAGATGCGTGCGGTGCTGGTGGAGCACGCCCTGGCCAATGGTGAGGC
TGAGCGCAACGTGGAAACCTCGGTGTTTGGCAAGGTTGCCAAATTCGAGCAGGAGCTCTG
TGCTACACTACCTCAGGAGGTTGAGGCTGCTAGAGGTGCAGTGGAGAATGGCACCGCCGC
AGAACCAAACCGTATCGTAGACTGCCGGTCATACCCTCTGTACCGGTTTGTGCGCGAGGA
GCTGGGCACGGTGTACTTGACCGGAGAGAAGACTCGGTCACCCGGCGAGGAGGTGGACAA
AGTGTTCGTTGCCATGAACCAGGGTAAGCACATCGATGCGCTGCTGGAGTGCCTCAAGGA
GTGGAACGGCGAGCCCCTCCCTATCAGCTAATCAATGAGATGAAGAGAAGATGCCGTGCT
TCACTAATTCTGAAAACTGATAATACTGTTCTTTTATTTTATTTTATTTTTCCTCTTCTA
AAGAGCTGATGCATTAACGTTCTTCCGGAGCTAGAGCTTCTGCTTATGTAAGTGAAAGGG
TATAAATTTTCATGACAAAAAAAAAAAAAAAA

Homology of Contig U35_14238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43800.1	715	1e-83	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi5g15830.1	716	3e-84
Arabidopsis v10	AT3G53260.1	717	1e-63	\| Symbols: PAL2, ATPAL2 \| phenylalanine ammonia-lyase 2 \| chr3:19744256-19746619 REVERSE LENGTH=717