- Probe CUST_26793_PI390587928
- Source Contig U35_18698
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26793_PI390587928 | Hv_44K_v2 | GCTTAACAGTGTGGTTAGCGATTTGGAAAATCAGATTGATAATTTTGAAGCGGAGCTTGA | 462 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.149 | 0.898 | 1.151 | 0.935 | 0.956 | 1.085 |
| Raw | 116.364 | 126.061 | 158.189 | 176.183 | 70.278 | 89.737 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251104.1 | 2810 | 2e-24 | 482 - 541 | 100 | 60 / 60 | plus | ABC09815 ABC40947 |
| MLOC | AK365298 | 3064 | 2e-24 | 486 - 545 | 100 | 60 / 60 | plus | ABC09815 ABC40947 ABC47127 |
| Harvest21 | ABC52349 | 729 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12049 | 804 | 3e-25 | 296 - 355 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12048 | 517 | 1e-24 | 459 - 517 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_18699 | 986 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18698 | 522 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (522 bp)
>U35_18698 522 Hv_44K_v2 AGAAGGAAAAAAAAAACCTCCTCCTCCTCCCCAATCGTAAACCCTAGCCCCGCCGGATGC CATGGGCGCCAGCCGGAAGCTGCAGGGCGAGATCGACCGCGTGCTCAAGAAGGTCCAGGA GGGCGTCGACGTCTTCGACAGCATCTGGAACAAGGTCTACGACACCGAGAATGCGAACCA GAAGGAGAAGTTCGAGGCCGACCTCAAGAAGGAGATCAAGAAGCTGCAGCGCTACCGGGA CCAGATCAAGACCTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGGTTAGTGCCTCTTA TGAGCAGGCTCTCATGGATGCCCGCAAGCAGATTGAGCGCGAGATGGAACGATTTAAGGT CTGTGAGAAGGAAACTAAAACCAAGGCCTTCTCGAAAGAAGGGTTAGGACAACAGCCGAA AACTGACCCTAGAGAGAAGGCTAAAGCTGAAACAAGAGATTGGCTTAACAGTGTGGTTAG CGATTTGGAAAATCAGATTGATAATTTTGAAGCGGAGCTTGA
Homology of Contig U35_18698 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g44900.1 | 857 | 5e-89 | protein|CCR4-NOT transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi1g13450.1 | 867 | 5e-98 | |
| Arabidopsis v10 | AT5G18230.2 | 845 | 2e-89 | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=845 |