barSeed - Barley Seed Development Database

Probe CUST_26791_PI390587928

Source Contig U35_18699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26791_PI390587928	Hv_44K_v2	TCTCACAAGGTACATCACAAGATCAAGCAGAGGAAACAACTTCAATAGAAAGCAATCCTG	923	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251104.1	2810	2e-24	928 - 987	100	60 / 60	plus	ABC09815 ABC40947
MLOC	AK365298	3064	2e-24	932 - 991	100	60 / 60	plus	ABC09815 ABC40947 ABC47127
MLOC	MLOC_78514.1	267	2e-24	80 - 139	100	60 / 60	plus	None
MLOC	MLOC_27332.1	171	3e-21	99 - 158	97	58 / 60	plus	None
JLOC1	JLOC1_52327.1	269	8e-25	80 - 139	100	60 / 60	plus
Harvest21	ABC12049	804	3e-25	742 - 801	100	60 / 60	plus
Harvest35	U35_18699	986	3e-25	924 - 983	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_18699 986 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCCGCAAACCAAAAGGAAGAAGGAAAAAAAAACCCTCCTCC
TCCTCCCCAATCGTAAACCCTAGCCCCGCCGGATGCCATGGGCGCCAGCCGGAAGCTGCA
GGGCGAGATCGACCGCGTGCTCAAGAAGGTTCAGGAGGGCGTCGACGTCTTCGACAGCAT
CTGGAACAAGGTCTACGACACCGAGAATGCGAACCAGAAGGAGAAGTTCGAGGCCGACCT
CAAGAAGGAGATCAAGAAGCTGCAGCGCTACCGGGACCAGATCAAGACCTGGATCCAGTC
CAGCGAGATCAAGGACAAGAAGGCTCTCATGGATGCCCGCAAGCAGATTGAGCGCGAGAT
GGAACGATTTAAGGTCTGTGAGAAGGAAACTAAAACCAAGGCCTTCTCGAAAGAAGGGTT
AGGACAACAGCCGAAAACTGATCCTAGAGAGAAGGCTAAAGCTGAAACAAGAGATTGGCT
TAACAGTGTGGTTAGCGATTTGGAAAATCAGATTGATAATTTTGAAGCGGAGCTTGAAGG
GCTTTCATTTAAGAAAGGAAAGCAAAGACCTCCTCGATTGGTACATTTAGAGAAATCTAT
TACGCGACATAAGGCTCATATAAAAAAATTGGAGTCAATTCTGAGACTCTTGGATAATGA
TGAGTTGAGTCCTGAGCAAGTCAATGATGTCAAAGATTTCCTAGAAGACTATGTTGAACG
TAATCAGGAAGATTTTGATGAATTTAGTGATGTCGAGGATCTCTATAGCACATTGCCTAT
GGAGAAGGTTGAAGCACTCGAAGACATGGTTTCACTTGCTCCTTCCAGTCTTATCAAGGG
TGTTGCTGCTGTTTCCACTACTGCAGTTTTGAGTACGAAGAGTCCGACAGCAACTTCACC
TACTCAGGCTACTGTATCAACAATCTCACAAGGTACATCACAAGATCAAGCAGAGGAAAC
AACTTCAATAGAAAGCAATCCTGAAC

Homology of Contig U35_18699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44900.1	857	0.0	protein\|CCR4-NOT transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g13450.1	867	0.0
Arabidopsis v10	AT5G18230.2	845	1e-142	transcription regulator NOT2/NOT3/NOT5 family protein \| chr5:6021610-6027031 REVERSE LENGTH=845