barSeed - Barley Seed Development Database

Probe CUST_26787_PI390587928

Source Contig U35_44965

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26787_PI390587928	Hv_44K_v2	ACTACGAGTCCCGTGCTGGGACCCAGACGTGATGTCTGCATCTTCCTCGCCCCAACAGTC	355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363521	3262	2e-24	708 - 767	100	60 / 60	plus	ABC11670 ABC18393
MLOC	MLOC_81442.1	214	2e-24	135 - 194	100	60 / 60	plus	None
Harvest21	ABC43270	422	3e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_44965	422	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (422 bp)

>U35_44965 422 Hv_44K_v2
ATGGCGCGCCTCGCCTCCTCAGACAAGAAGCTCCGCCCCCTCGACGTCGGGCAGACGCAC
GCGCAGGTCGTGCCGGCTCCCCCGGTGCTGCCCGCCTCCCCGGCCGAGAAGCATGCGGCG
ATCCCCAAGAGCACCTCCATCCGCTCCAAAGGCTACCTGAAGCATCGCGTGACGAAGCCG
GTGAACGTCGGCTCGCAGCAGCGCGTGTTCGTGGGCGTGGACGGCGCGAAGGCGGAGGAG
CACAAGGACGGAAGCGACGGCGGGGAGAAGGGCGGTCAGGTCCCCACGGCTCCCGATGCC
AAGGTCTGGGTCTGGCCGCTCGATGCTGAGGTCGTGCTCATCGGCGCCGTGCAGCACTAC
GAGTCCCGTGCTGGGACCCAGACGTGATGTCTGCATCTTCCTCGCCCCAACAGTCCCCCT
TG

Homology of Contig U35_44965 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None