- Probe CUST_26564_PI390587928
- Source Contig U35_133
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26564_PI390587928 | Hv_44K_v2 | CCGGCACTTTGTTTTGATGTCTCTTGATGTTAAAACTTAGATCATATATCTGTTATACCC | 566 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250137.1 | 2948 | 9e-22 | 2791 - 2848 | 98 | 57 / 58 | plus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959 |
| MLOC | MLOC_64334.1 | 2298 | 9e-22 | 1536 - 1593 | 98 | 57 / 58 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959 |
| JLOC1 | JLOC1_42232.1 | 958 | 5e-22 | 196 - 253 | 98 | 57 / 58 | minus | |
| Harvest21 | ABC00855 | 276 | 3e-25 | 188 - 247 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00331 | 624 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus | ABC00331 |
| Harvest21 | ABC00827 | 857 | 8e-21 | 17 - 71 | 98 | 54 / 55 | minus | ABC00827 |
| Harvest35 | U35_133 | 656 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_141 | 859 | 6e-22 | 787 - 843 | 98 | 56 / 57 | plus |
Contig Sequence (656 bp)
>U35_133 656 Hv_44K_v2 GCACACTGATGCTATTCACAGGGTGTGGNNNCAGGTCATCCCAACAGCCAGGAGGGTCAT TTACGCTTCTCAGCTCACTGCTAAGCCAAGGCTGCTGGAGCCTGTGTACCTGGTTGAGAT CCAGGCCCCCGAGAATGCACTTGGTGGTATCTATGGTGTTTTGAATCAGAAGAGAGGGCA TGTGTTTGAGGAGATGCAGAGGCCTGGTACCCCGCTGTACAACATCAAGGCTTACCTCCC GGTCATCGAGTCCTTCGGGTTCTCAAGTACCCTCAGGGCAGCTACATCTGGCCAGGCTTT CCCCCAGTGTGTGTTTGACCACTGGGACATCATGTCTTCTGATCCTCTGGAGGCCGGCTC CCAGTCTGCCACCCTTGTCACGGAGATCCGCAAGCGCAAGGGTCTCAAGGAACAGATGAC TCCTCTATCTGATTTCGAGGACAAGCTCTAAACTTTTGATTCTGTTACATGGTCTAGTTT GCTTATGCTGCTAAGAGAGCTGCGCTATTTTCTGTCATTTGAGCCTGTCGCTGTATTGCT ATTGCAATGTCCTATCTGTCGTGGTACCGGCACTTTGTTTTGATGTCTCTTGATGTTAAA ACTTAGATCATATATCTGTTATACCCTGGTAGTTTTTTAAAAAAAAAAAAAAAAAA
Homology of Contig U35_133 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g32030.1 | 844 | 1e-87 | protein|elongation factor, putative, expressed |
| Brachypodium v1_2 | Bradi3g44480.1 | 844 | 1e-91 | |
| Arabidopsis v10 | AT1G56070.1 | 843 | 3e-82 | | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843 |