barSeed - Barley Seed Development Database

Probe CUST_26547_PI390587928

Source Contig U35_141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26547_PI390587928	Hv_44K_v2	GTCGTGGTACTGGCACTTTGTTTTGATGTCTCTCGATGTTAAAACTTAGATCATATATCT	775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250137.1	2948	2e-24	2780 - 2839	100	60 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_64334.1	2298	2e-24	1545 - 1604	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	AK361008	1917	7e-23	1836 - 1895	98	59 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_20444.1	1330	7e-23	717 - 776	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
JLOC1	JLOC1_42232.1	958	8e-25	205 - 264	100	60 / 60	minus
JLOC1	JLOC1_14165.1	1005	4e-23	392 - 451	98	59 / 60	minus
Harvest21	ABC00827	857	3e-25	23 - 82	100	60 / 60	minus	ABC00827
Harvest21	ABC00677	1978	3e-25	1872 - 1931	100	60 / 60	plus
Harvest21	ABC00901	2854	1e-23	2754 - 2813	98	59 / 60	plus	ABC00901
Harvest35	U35_141	859	3e-25	776 - 835	100	60 / 60	plus
Harvest35	U35_38622	674	1e-23	38 - 97	98	59 / 60	minus
Harvest35	U35_373	2860	1e-23	2754 - 2813	98	59 / 60	plus

Contig Sequence (859 bp)

>U35_141 859 Hv_44K_v2
GAGGAGTTCGGGTGGGACAAGGATCTTGCCAAGAAGATTTGGTGCTTTGGACCTGAAACG
ACTGGCCCGAACATGGTTGTTGACATGTGTAAGGGAGTGCAGTATCTTAATGAAATCAAG
GACTCTGTTGTGGCTGGGTTCCAGTGGGCATCAAAGGAAGGTGCTCTGGCTGAGGAAAAC
ATGCGTGGCATTTGCTTTGAGGTCTGTGACGTTGTTCTGCACACTGATGCTATTCACAGG
GGTGGTGGTCAAGTCATCCCAACAGCCAGGAGGGTCATTTACGCTTCTCAGCTCACGGCT
AAGCCAAGGCTGCTGGAGCCTGTGTACCTGGTTGAGATCCAGGCCCCTGAGAATGCACTT
GGTGGTATCTATGGTGTTCTGAATCAGAAGAGAGGGCACGTGTTTGAAGAGATGCAGAGA
CCTGGTACCCCGCTGTACAACATCAAGGCTTACCTCCCGGTCATTGAGTCCTTCGGGTTC
TCAAGTACCCTCAGGGCAGCTACTTCTGGCCAGGCTTTCCCCCAGTGTGTGTTTGACCAC
TGGGACATCATGTCTTCTGATCCTTTGGAGGCTGGCTCCCAGTCTGCCACCCTTGTCACG
GAGATCCGCAAGCGCAAGGGTCTCAAGGAACAGATGACCCCTCTATCTGATTTTGAGGAC
AAGCTCTAAATTTTTGATTCTGTTACATGGTCTAGTTTGCTTATGCTGCTAAGAGAGCTG
CGCTATTTTCTGTCAATTGAGTCTGTCGCTGTATTGCTATTGCAATGTCCTATCTGTCGT
GGTACTGGCACTTTGTTTTGATGTCTCTCGATGTTAAAACTTAGATCATATATCTGTTAT
ACCAAAAAAAAAAAAAAAA

Homology of Contig U35_141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32030.1	844	3e-149	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844	2e-153
Arabidopsis v10	AT1G56070.1	843	1e-141	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843