barSeed - Barley Seed Development Database

Probe CUST_26546_PI390587928

Source Contig U35_142

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26546_PI390587928	Hv_44K_v2	CCAAAGCCGTAATCTCTGGTTTGAATATTGTTATATTTCTCACCGAGTAACAATGGTATA	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44795.5	1880	2e-24	456 - 515	100	60 / 60	plus	ABC21951 ABC36259
MLOC	MLOC_44795.4	1779	2e-24	456 - 515	100	60 / 60	plus	ABC21951 ABC36259
JLOC1	JLOC1_29060.3	3957	8e-25	814 - 873	100	60 / 60	plus
JLOC1	JLOC1_29060.2	3957	8e-25	814 - 873	100	60 / 60	plus
JLOC1	JLOC1_29061.1	4715	8e-25	2962 - 3021	100	60 / 60	minus
JLOC1	JLOC1_29060.1	6930	8e-25	3787 - 3846	100	60 / 60	plus
Harvest21	ABC36259	652	3e-25	424 - 483	100	60 / 60	plus	ABC36259
Harvest35	U35_39986	652	3e-25	424 - 483	100	60 / 60	plus
Harvest35	U35_142	641	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_142 641 Hv_44K_v2
GAGGCTGATCCGCTCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGTTGGATTCATCTT
CCGTGAGCACAATGCCTCTCCAGGGTATTACGATGGCCGATACTGGACAATGTGGAAGCT
ACCTATGTTTGGGTGCACCGACGCCACACAGGTGTTAAACGAAGTGGAGGAGGTCAAGAA
GGAGTACCCTGACGCCTATGTCCGCATCATCGGATTCGACAACATGCGTCAGGTGCAGTG
CGTCAGCTTCATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCTGGCAAGGCCTAAACAAG
CTAACTCCCTTTTATCATACAACATGGTTTCGTGCCAGGGACATGTTTTAACCATGAGGG
TCGTATTTTATCATGGTGTTGGATCCCAAGTTTTTATGGATTCTTTTTTCGTTACCGGGG
TCGACCCCAAAGCCGTAATCTCTGGTTTGAATATTGTTATATTTCTCACCGAGTAACAAT
GGTATAAAAGAGACGATATTTATGAAAAAAAATCTAAGACATTGTATGAGTCGTCTATTA
TTCACATGTATTTTAGTCTTTATTTCAATCCTCCTATATTTATAGGATTTGTAATGGTAA
ATATAAAGATAACATTGAAAAATAATTGATTGGATCACAAA

Homology of Contig U35_142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19470.1	170	1e-56	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	4e-65
Arabidopsis v10	None