barSeed - Barley Seed Development Database

Probe CUST_26401_PI390587928

Source Contig U35_14490

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26401_PI390587928	Hv_44K_v2	GAGCTAAGCGGATTTGGATTTGTTTTGTTGCTAATCTACCTTACTACGTATATTGCTTGC	999	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.539	1.774	1.316	0.782	0.312	0.383
Raw	702.030	755.876	497.640	462.267	66.249	87.858

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67057.1	1086	3e-22	1017 - 1075	98	59 / 60	plus	ABC01598 ABC01599 ABC01600
JLOC1	JLOC1_44233.1	1137	1e-22	1045 - 1103	98	59 / 60	plus
Harvest21	ABC01598	1086	5e-23	1010 - 1068	98	59 / 60	plus	ABC01598
Harvest35	U35_14490	1077	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1077 bp)

>U35_14490 1077 Hv_44K_v2
TGCGGCTCCACCGCAGCCACACACCACAGGTAGGGGAGGGAGGAGAGAAGAGGAAGCCGA
GACGCAGCGGCGGAGATGGTTTCCCTGAAGCTGCAGAAGCGGCTCGCCTCGAGCGTGCTT
AAGTGCGGCAAGGGCAAGGTCTGGCTCGACCCCAATGAGGTCAACGAGATCTCCATGGCC
AACTCTCGCCAGAACATTCGAAAGTTGGTGAAGGATGGCTTCATCATCAAGAAGCCCCAA
AAGATCCACTCAAGGTCCCGTGCACGCAGAGCCCACGAGGCAAAACAGAAGGGCCGCCAT
TCTGGATATGGTAAGCGCAGGGGTACAAGGGAGGCTAGGCTTCCCACCAAGATTCTGTGG
ATGAGGAGGATGCGCGTGCTCAGACGCCTGCTCCGCAAGTACCGTGAAGCAAAGAAGATC
GACAAGCACATGTACCATGACATGTACTTGAAGGTCAAGGGTAACATGTTCAAGAACAAG
CGTGTGCTTATGGAAAGCATTCACAAGTCAAAGGCTGAGAAGGCTAGAGAGAAGACGCTC
TCTGACCAGTTTGAGGCTAAGCGTGCCAAGAGCAAGGCAAGCCGTGAAAGAAAGATTGCC
AGGAGGGAGGAGAGGCTTGCTCAGGGCCCAAGGGACCATTCAGCAGCTCCTGCTCAACCT
GCAGCGGCACCAAAGAAGTCAAAGAAGTGAAGATCTGACGTTTAAGCTTTCTGTTTACTC
GGTGAAATCAGTTTGGTCTTATCTAAATTTTCAAGTATGAACTGTTTTGTTCAGTCTGGA
TACCCTGGATACTATGTTTAAGTATCTTTGTTATCCCAGATACCCTGGATACTATGTTTC
ATGCTACTGGATGTAGTATTAGATGCTTATGCAAAGTTCCTTCTGAAAAAAAAAAAAAAA
ATGCTGATGTCTCTTTCTGTCCGTTTATATCCAAGTGGTTTTGGTATGTGGTAGTTTGGT
GTATCTTTTGTCAAAGGCATAATTTTAGCTCACTGTGATGAGCTAAGCGGATTTGGATTT
GTTTTGTTGCTAATCTACCTTACTACGTATATTGCTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38260.1	207	8e-87	protein\|60S ribosomal protein L19-3, putative, expressed
Brachypodium v1_2	Bradi1g63010.1	209	3e-88
Arabidopsis v10	AT3G16780.1	209	9e-78	Ribosomal protein L19e family protein \| chr3:5708982-5710249 FORWARD LENGTH=209