barSeed - Barley Seed Development Database

Probe CUST_26399_PI390587928

Source Contig U35_14491

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26399_PI390587928	Hv_44K_v2	CTGTGCAATATCGTGTTTGTGTCAACTTGTCAGATACCTTAAATATCATATCGTGTTTGT	770	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354527	3226	2e-24	771 - 830	100	60 / 60	plus	ABC01598 ABC01599 ABC01600 ABC07863 ABC19551 ABC36945
MLOC	MLOC_39391.1	976	3e-21	1 - 54	100	54 / 54	minus	ABC01598 ABC01599 ABC01600 ABC36945
JLOC1	JLOC1_25679.1	1282	8e-25	866 - 925	100	60 / 60	plus
Harvest21	ABC01599	1054	3e-25	854 - 913	100	60 / 60	plus	ABC01599
Harvest21	ABC36945	415	6e-22	26 - 85	97	58 / 60	minus	ABC36945
Harvest21	ABC31848	495	6e-22	57 - 116	97	58 / 60	minus
Harvest35	U35_14491	971	3e-25	771 - 830	100	60 / 60	plus

Contig Sequence (971 bp)

>U35_14491 971 Hv_44K_v2
GGCTGCCACAACCAGACGGAAGGTAAGGGAGGAGGAGGAGAAGGAGAGCGGCGGCGAAGA
TGGTGTCGCTGAAGCTGCAGAAGCGCCTGGCCTCGAGCGTCCTCAAGTGCGGCAAGGGCA
AGGTCTGGCTCGACCCCAATGAGGTCAACGAGATCTCCATGGCCAACTCACGGCAAAACA
TCCGGAAGCTGGTAAAGGATGGTTTCATCATCAGGAAGCCTCAGAAGATCCACTCCAGGT
CTCGTGCAAGGAGGGCACATGAGGCCAAGCAGAAGGGCCGTCACTCTGGATATGGTAAGC
GTAGGGGTACCAGGGAGGCTAGGCTCCCCACCAAGATCCTGTGGATGCGGAGGATGCGTG
TGCTGAGGCGTCTTCTGCGCAAGTACCGTGAGGCAAAGAAGATCGACAAGCACATGTACC
ATGACATGTACCTGAAGGTCAAGGGTAACATGTTCAAGAACAAGAGGGTCCTCATGGAGA
GTATCCACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACCCTATCTGACCAGTTTGAGG
CCAAGCGTGCCAAGAGCAAGGCAAGCAGGGAGAGGAAGATTGCCAGGAGGGAGGAGAGAT
TGGCCCAGGGCCCCAGAGATCATGCACCGGCACCAGCGGCTGCAGCTCCAGCTCCGGCAG
CAGCGGCACCAAAGAAGGCCAAGAAGTGAAGGTCTGACTTGAAGCTTTAGCTTTCTGGTA
TCATCAAGGGTTAGCCTAATTTTGGAACATCAGAAGTTCAGAACTGTTTCCTGTGCAATA
TCGTGTTTGTGTCAACTTGTCAGATACCTTAAATATCATATCGTGTTTGTTCTGCTGGAT
GTTTCAGAGATGCTTAAGCAGAGTTTGTTAAAACATTTGGGTTCACGGTATTATATTATG
CTTTTGAACCTAAAAAAAAAAAAAAAAAGTGCAAATTTTCTTGATGTGATGATTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38260.1	207	7e-87	protein\|60S ribosomal protein L19-3, putative, expressed
Brachypodium v1_2	Bradi1g63010.1	209	3e-88
Arabidopsis v10	AT3G16780.1	209	1e-78	Ribosomal protein L19e family protein \| chr3:5708982-5710249 FORWARD LENGTH=209