barSeed - Barley Seed Development Database

Probe CUST_26178_PI390587928

Source Contig U35_15179

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26178_PI390587928	Hv_44K_v2	CCTCTTCTCTTTTGTTAATTTCGGTTCTTTACTTTACCTCCATTGAAGGGAAAAAAGAAC	1580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64056.1	2152	2e-24	2026 - 2085	100	60 / 60	plus	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736
MLOC	AK358061	2918	7e-23	2035 - 2091	100	57 / 57	plus	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736
JLOC1	JLOC1_42016.1	2134	8e-25	2021 - 2080	100	60 / 60	plus
Harvest21	ABC05664	1344	3e-25	1217 - 1276	100	60 / 60	plus	ABC05664
Harvest35	U35_15179	1728	3e-25	1581 - 1640	100	60 / 60	plus

Contig Sequence (1728 bp)

>U35_15179 1728 Hv_44K_v2
TATAGGGCGAATTGGGCCTCCTGATCGAGGCTCGAGCGGCCGCTATTTCTGCCACTATGG
AATTGTGATATTTGTTAGACAACAAGTCAACAACAACAATAGCGTCGTCGCTGTCTGTTA
AGGAACAATGCCAAGAGGCGCACTGCAAACAAGGATACAGTTCAGGTCTCTTGTTCTTTC
TTCTCCCCCACTCCAACCCAGCTGCATTCATTCCTGGACAAAGCTTAACCCTTCATGTGT
TTCTTTCATCTTTTGGGCAGGAAAAACATCTCTGCACCAACCATGAGAATATCAGTGGGA
GCAGTGTCGGGAAAGGTGGCTGCTTAGCTGGCTCGGCATCATCTTGCGCCAGATGACGCA
CTCTTATCTCACTAGCTGGTGGTGTCCACGGAGACCATCACGCCCAACTACTACGTCGGC
AAGGAGCGCGCCATGCTGCTGCCCAACTGCCTCTTCCGCATGGGCGGCGCGGCGGCGCTG
CTGTCCACGTCCCGCGCCAAGGCACGCTTCCGGCTGTCCCGCGTGGTGCGCACGCTGACG
GGCGCGCAGGACAACGCGTACCGGTGCGTGTACCAGGAGGAGGACGAGGAGGGGCACCGC
GGCATCAACCTGAACAAGGACCTGATGACCATCGCCGGGGACGCGCTGAAGGCGAACATC
ACGGCGATCGGGCCGCTGGTCCTCCCGGCGTCGGAGCAGCTGCTGTTCGCGCTGTCCTTC
ATTGCGCGGCGGGTGTTCAACAACAAGAGCATCAAGCCGTACCTCCCCGACTTCCGGTTG
GCGTTCGAGCACTTCTGCATCCATGCGGGCGGTCGCGCCGTGATCGACGAGCTGCAGAAC
AGCCTGGGGCTGTCGGACGAGCACGTGGAGGCGTCGCGCATGGCGCTGCACCGGTTCGGC
AACACGTCCAGCAGCTCGCTGTGGTACGAGCTGGCCTACATCGAGGCCAAGGGGCGCATG
CGCAGGGGCGACCGCGTGTGGATGATCGGCTTCGGCTCCGGGTTCAAGTGCAACAGCGCG
GCGTGGGAGTGCATCCAGCCCGCGCGCGACGCACAGCAGGGCCCGTGGGCCGACTGCGTC
AGCCGCTACCCGGTCCACATCCCGGAGGTGCTCAAGCATTAACCAACGCAACAGGATCCA
TTCCTCTATCGCGTCTCTCTCTCTCTCTCTCCCTCCATTGTATCTCTAGCCGGTAACCAG
TATGCCCCGTGCATGCATGCATGCATGCATGCATGCATTTCTTCTACTCGTATTCTACTA
TTCGTCTGGTGTGTGTTTCCCTCGCTGCTCGTGCCCATAACGTCGAGGAGGAGGATACGG
CCGGCCGGCCGGAGACGCAGCTGGGCCGGCCGGCGTAATAGCAGCCGCGGTGGCCGAGTT
AAATATGCCGGATCTGTCTGACGCGCGCATGTGAGGCGCCACACCGACGGCCGGTGGTTG
CGCTCCGGCACAAAGGGCTTAATTTCTTCCGGTCATTCATAAACGTATAAATCGTGGTCC
TCGATCGCGAGCGTACCTTTTTTTCTTCTTCTCATTTCTCTCTTGTTCATTTTACTATTC
TTCCTTCCCGTTCTCCCGGACCTCTTCTCTTTTGTTAATTTCGGTTCTTTACTTTACCTC
CATTGAAGGGAAAAAAGAACTAATATGTACTGTATTACTACGAGTTTGACAATAAATCGA
TTTACCGGAAAAAAAAAAAAAAAAGAAACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g14810.1	493	2e-157	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g44030.1	492	3e-163
Arabidopsis v10	AT1G68530.1	497	1e-125	\| Symbols: CUT1, POP1, CER6, G2, KCS6 \| 3-ketoacyl-CoA synthase 6 \| chr1:25712881-25714733 REVERSE LENGTH=497