barSeed - Barley Seed Development Database

Probe CUST_26156_PI390587928

Source Contig U35_15182

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26156_PI390587928	Hv_44K_v2	GGATTACTGTTCATCATGCATGTTCACGTTGTGCCAAATAATATACCGTATGATATTGTT	995	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.037	0.813	0.720	0.588	1.345	1.198
Raw	3.976	3.146	2.865	3.790	3.307	3.244

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8870.1	1804	2e-24	60 - 119	100	60 / 60	minus	ABC05664 ABC06409 ABC17547 ABC18311 ABC41146 ABC41736
JLOC1	JLOC1_5855.1	1821	8e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC18311	1088	3e-25	1003 - 1062	100	60 / 60	plus	ABC18311
Harvest21	ABC41146	417	6e-22	26 - 85	97	58 / 60	minus	ABC41146
Harvest35	U35_15182	1081	3e-25	996 - 1055	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_15182 1081 Hv_44K_v2
CCACGCCGTCCCTGGTGGACATGATCGTGAACAAGTACAAGCTGCGGAGCGACATCCGCA
GCATGCACCTCTCCGGCATGGGGTGCAGCGCGGGGCTCATCGCCGTGGGGCTCGCGAGGA
ACCTGCTGCAGGTGGCCCCCCATGGCGCGCACGCGCTGGTCGTCTCCACGGAGACCATCA
CGCCCAACTACTACCTCGGGATCGAGCGCGCAATGCTCCTGCCCAACTGCCTCTTCCGCA
TCGGCGGGGCGGCCGCGCTGCTGTCGACGTCCCCGGCGAAGGCCCGGTTCCGCCTCAAGC
ACCTCATACGCACGCTCACCGGCGCCCAGGACGGCGCGTACCGGTGCGTGTTCCAGGAGG
AGGACGGCGAAGGCCACCGCGGGATCAACCTCAGCAAGGACCTGATGAACATCGCCGGCG
ACGCGCTCAAGGCGAACATCACCGCGATGGGGCCGCTGGTCCTGCCGGCCAGCGAGCAGC
TCAAGTTCGCCTACTCCTTCGTCGCGCGGAAGGCGATCAACAGGCGGGTGAAGCCGTACA
TCCCCGACTTCCGCACGGCGTTCGAGCACTTCTGCATCCACGCCGGCGGCCGCGCCATCA
TCGACGAGCTGCAGAAGAACCTCGGGCTCTCCGACGAGCAGGTGGAGGCGTCGCGGATGA
CGCTGCACAAGTTCGGGAACACGTCGAGCAGCTCGCTGTGGTACGAGCTCGGGTACATCG
AGGCCAAGGGCCGCATGCGCAAGGGCGACCGCGTGTGGATGATCGGCTTCGGGTCTGGTT
TCAAGTGCAACGGCGCGGCGTGGGAGTGCATCCAGCCCGCGCGCAACGCTGATGGGCCGT
GGGCGACGTCCATCCACAGATACCCGGTGGACATTCCCGACGTTCTCACCCATTAGCCCA
CCACCGCTGGCCATCGAGACGATTACACTGCGTCATGCTCGTGTTTCATTAAATAATTTT
CCGTTTACCCCATTAACTGTTTGTTATCGCCCAAAGGATTACTGTTCATCATGCATGTTC
ACGTTGTGCCAAATAATATACCGTATGATATTGTTTTTTGATTTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_15182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g14810.1	493	0.0	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g44020.1	488	0.0
Arabidopsis v10	AT1G68530.1	497	5e-139	\| Symbols: CUT1, POP1, CER6, G2, KCS6 \| 3-ketoacyl-CoA synthase 6 \| chr1:25712881-25714733 REVERSE LENGTH=497