barSeed - Barley Seed Development Database

Probe CUST_25957_PI390587928

Source Contig U35_36529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25957_PI390587928	Hv_44K_v2	ATCGCATGTAATCCTGCAATCGCTGCTAGTAATGCTATCGTTATTCTGATATTTATCAGA	19	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69436.2	1815	2e-24	1715 - 1774	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.1	1607	2e-24	1546 - 1605	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
MLOC	MLOC_69436.4	2507	2e-24	2292 - 2351	100	60 / 60	plus	ABC02222 ABC02226 ABC48039
JLOC1	JLOC1_46004.1	1633	8e-25	1449 - 1508	100	60 / 60	plus
Harvest21	ABC02224	1779	2e-21	1702 - 1759	97	58 / 60	plus
Harvest35	U35_36529	582	3e-25	20 - 79	100	60 / 60	minus

Contig Sequence (582 bp)

>U35_36529 582 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCTGATAAATATCAGAATAACGATAGCATTACTAGCAGCGA
TTGCAGGATTACATGCGATAGGTAAAGAGTCAAGGATGACACAAACAAATAACATCATTC
GGTCATTACATAGTCTTAACAAATAAAGTGAGGACTCCAGCAACAGCAACATGAGCAGCG
ACGCCTCCCTCCCCAGCACATAGAACCACAGCCTAGCAACTACAAAAATTCCCAAAACAT
GGCTTAATAAATCCCAAATTGTCCACGACAACGACTTTAAAGTAGAACTTCTGGATGTCA
AACAGCATCCTCTCATCTTCACGCGTAACAAAGTTGATGGCCACACCCTTCCTTCCAAAC
CGACCACTACGACCAATGCGATGCAGGTAGTTCTCTGGCTGGGTCGGGAGGTCATAGTTG
ATGACCAGGGACACTTGCTGGACATCAATACCACGAGCAAGCAGGTCAGTGGTGATGAGC
ACACGTGAAGAACCTGATCTGAACTCCCTCATGATGATGTCCCTAGTGTTCTGGTCCATG
TCTCCATGAGTAGCGGAGACGGTGTGGTCCCTGCCCCTCATC

Homology of Contig U35_36529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48750.3	370	5e-62	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g34170.2	404	6e-63
Arabidopsis v10	AT1G54270.1	412	1e-59	\| Symbols: EIF4A-2 \| eif4a-2 \| chr1:20260495-20262018 FORWARD LENGTH=412