barSeed - Barley Seed Development Database

Probe CUST_25808_PI390587928

Source Contig U35_29708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25808_PI390587928	Hv_44K_v2	CCTGCAACCAACAGACTCTTGAAACCCGTGTACCTGTGAAGGAGGTCCGAAAGGAACCAA	238	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68145.1	3691	2e-24	2334 - 2393	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.3	3182	2e-24	2314 - 2373	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.7	1829	2e-24	1452 - 1511	100	60 / 60	minus	ABC03651 ABC21572
MLOC	MLOC_68145.6	3152	2e-24	2278 - 2337	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.5	3145	2e-24	2310 - 2369	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.8	2304	2e-24	1451 - 1510	100	60 / 60	minus	ABC03651 ABC21572
MLOC	MLOC_68145.4	3249	2e-24	2312 - 2371	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
MLOC	MLOC_68145.2	3220	2e-24	2334 - 2393	100	60 / 60	minus	ABC03650 ABC03651 ABC21572
JLOC1	JLOC1_45057.3	3199	8e-25	810 - 869	100	60 / 60	plus
JLOC1	JLOC1_45057.2	3202	8e-25	810 - 869	100	60 / 60	plus
JLOC1	JLOC1_45057.1	3187	8e-25	795 - 854	100	60 / 60	plus
Harvest21	ABC29135	586	3e-25	239 - 298	100	60 / 60	plus
Harvest35	U35_29708	586	3e-25	239 - 298	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_29708 586 Hv_44K_v2
GACAATGGCTGTGACACCTGGTATCACGCAAGGCGCAAGTGAAAATTCTGGAATGTCTCG
TGTGATCGGCAACATTGGCCCTTTGTCGTCTGGTCCAGACATGGTTCCTCTGAACGCCAA
CATGGGGGAAGCTCCTGATGAGCATGTGAACACACTGCTGTCTCTGGGGATGAACCCTAC
ACACCATGATCGCCCCAGAGCATGCAACAACAACCTTGTGATAGACACAGCGGACACACC
TGCAACCAACAGACTCTTGAAACCCGTGTACCTGTGAAGGAGGTCCGAAAGGAACCAAAG
TTCAGCTGCCCAGTCTGCATGAATGAGCTGGTCGATGCGTTGTCGACCATCTGTGGCCAC
ATCTTCTGCCAGAACTGCATTGAGGCCTCGATCCAGGCTCAGAGCAAATGACCGACCTGC
CGTAGGACGCTAACCATGGACAGTTTCCACCGCGTCTACCTCCAGGCGATGGACTAACCT
GGTCCAGCCATTCTCGGCATAGCAGAGCCTTGGCACCTGTGCTCCTCTCTCTTCTTNGCA
CTGTTTGTTTTCTCCACATTGATGACTATCGCGACTCCTCAAGTGC

Homology of Contig U35_29708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None