barSeed - Barley Seed Development Database

Probe CUST_25632_PI390587928

Source Contig U35_31569

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25632_PI390587928	Hv_44K_v2	TAAAAATACTTTACAGGAGCACTGGAGCTGAGGATGTGGCGATAAAGATTCTCTACTGCG	158	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65244.1	1389	2e-24	1103 - 1162	100	60 / 60	minus	ABC04260 ABC07292 ABC19854
Harvest35	U35_31569	494	3e-25	159 - 218	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_31569 494 Hv_44K_v2
ACGGCCAGGAAGGCGGTGGGTCTGGCGGCGCTCGAGAGCTCCGGCCACCTCTCCCCTCTC
GCCATAACCCGGAGGTACCTACGTACTCTCCTCTCGTCGATCTCGACCTCGATCGCCCCA
TACGTAGTAGTGGAATGGAGATGATGTACGGTTGTTGGTAAAAATACTTTACAGGAGCAC
TGGAGCTGAGGATGTGGCGATAAAGATTCTCTACTGCGGGATATGCCACTCTGACCTGCA
CAGCATTAAGAACGAGTGGAAAAACGCTAGGTACCCGATGATCCCTGGGCACGAGATCGC
CGGCGAGGTCACCGAGGTGGGCAAGAAGGTGACCAGGTTCGCGGCCGGCGACCGCGTGGG
CGTCGGGTGCATGGTGAACTCGTGCGGGTCGTGCGAGAGCTGCGCCAAGGGCTGCGAGAA
CCACTGCCCGGCTATGGCCTTCACCTACAACTCGTTCGACGACAGCGGCAGCGGCACCAA
CGCCGTCACCTACG

Homology of Contig U35_31569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16910.1	333	6e-52	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g17920.1	372	2e-53
Arabidopsis v10	None