barSeed - Barley Seed Development Database

Probe CUST_25612_PI390587928

Source Contig U35_29257

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25612_PI390587928	Hv_44K_v2	TCAGTTGTGTCCAATTGTTGCTATGCAACAACTACATGCACTTTGATGATTTATAGCAAC	1154	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48407.1	175	2e-24	28 - 87	100	60 / 60	minus	ABC12916 ABC26639 ABC28494
MLOC	MLOC_36197.2	1939	6e-24	1835 - 1893	100	59 / 59	plus	ABC12916 ABC26639 ABC28494
MLOC	AK250875.1	1256	7e-23	1159 - 1218	98	59 / 60	plus	ABC12916 ABC26639 ABC28494
MLOC	MLOC_1079.1	958	7e-23	867 - 926	98	59 / 60	plus	ABC12916 ABC26639 ABC28494
MLOC	AK251354.1	1247	3e-22	1159 - 1217	98	58 / 59	plus	ABC12916 ABC26639 ABC28494
JLOC1	JLOC1_31097.1	204	8e-25	55 - 114	100	60 / 60	minus
JLOC1	JLOC1_23298.1	762	3e-24	665 - 723	100	59 / 59	plus
JLOC1	JLOC1_665.1	1000	4e-23	808 - 867	98	59 / 60	plus
Harvest21	ABC28494	1284	3e-25	1155 - 1214	100	60 / 60	plus	ABC28494
Harvest21	ABC26639	4904	1e-23	4609 - 4668	98	59 / 60	plus	ABC26639
Harvest21	ABC12916	1226	5e-23	1108 - 1166	98	58 / 59	plus	ABC12916
Harvest35	U35_29257	1284	3e-25	1155 - 1214	100	60 / 60	plus
Harvest35	U35_28026	4904	1e-23	4609 - 4668	98	59 / 60	plus
Harvest35	U35_6218	1226	5e-23	1108 - 1166	98	58 / 59	plus

Contig Sequence (1284 bp)

>U35_29257 1284 Hv_44K_v2
ACAACATTGTAGTGCACTGCTTTCCGCATCCCATCTTCCATCCCCCCCCTGATTTTACCA
TGGAGAACATCCTTCATGCAACCCCAGCTCATGTGTCCCTCCCGGAAAGCTTCGTCTTCG
CTTCCGACAAGGTCCCGCCGGCCACCAAGGCTGTCGTCTCGCTGCCCATCATCGATCTCT
CATGTGGTCGTGATGAGGTCCGCCGTTCAATCCTCGAGGCCGGCAAGGAGCTCGGATTCT
TCCAGTCGTCAACCATGGCGTCTCCAAACAGGTCATGCGGGACATGGAGGGCATGTGCGA
GCAGTTCTTCCATTTGCCGGCAGCGGACAAGGCATCGTTGTACTCGGAAGAGCGACACAA
GCCGAACAGGCTCTTCTCCGGTGCTACCTATGACACGGGGGGCGAGAAATACTGGCGGGA
CTGCCTCCGCCTTGCCTGCCCCTTCCCAGTTGACGACAGCATCAACGAATGGCCCGATAC
TCCCAAAGGGCTCCGGACGTTATCGAGAAGTTCACCAGCCAAACCAGAGACGTGGGGAAG
GAATTGTTGCGCCTCTTGTGTGAGGGTATGGGGATCCAGGCTGACTACTTTGAGGGAGAC
CTTAGCGGGGGTAATGTGATCCTTAACATCAACCACTATCCATCTTGCCCGAACCCAGAC
AAAGCGCTTGGACAGCCGCCCCATTGTGACCGAAATCTCATCACCCTCCTACTCCCTGGC
GCTGTCAATGGCCTCGAGGTCTCCTACAAGGGGGACTGGATTAAGGTTGACCCTGCACCT
AACGCATTTGTCGTCAACTTCGGCCAACAACTCGAGTTGTGACAAATGGGTTGTTAAAGA
GCATAGAGCACCGTGCAATGACAAACTCAGCGCTTGCACGCACATCGGTGGCTACCTTTA
TCATGCCTACTCAAGAATGTCTTATTGGTCCCGCGAAGGAGTTCCTTAGCAAAGAAAACC
CACCGTGCTACCGCACCACCATGTTTCGTGACTTCATGCGCATCTACAATGTTGTCAAGC
TTGGGTCATCGCTCAATCTCACAACCAATCTCAAGAACGTCCAGAAGGAGATATAAAGCA
AATCTACAAGATTCCTTCAAGATCTGGAATTATCCTATTCCCACTTGTTATGTTTCTTAC
CTATGCCATAGATCTCAGTTGTGTCCAATTGTTGCTATGCAACAACTACATGCACTTTGA
TGATTTATAGCAACAAAATTAATAAATACATGATGAGTATAAGACGTTAATCATCTTAGT
GCTCATTTGTTGTCACTTACTTGT

Homology of Contig U35_29257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07410.2	341	1e-104	protein\|oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi1g46480.1	349	2e-130
Arabidopsis v10	None