barSeed - Barley Seed Development Database

Probe ABC12916

Source Contig ABC12916

barSeed

Links

Affymetrix Source Sequence (1226 bp)

>ABC12916 1226
GATTTTACCATGGAGAACATCCTTCATGCAACCCCAGCTCCTGTGTCCCTCCCGGAAAGC
TTCGTCTTCGCTTCCGACAAGGTCCCGCCGGCCACCAAGGCTGTCGTCTCGCTGCCCATC
ATCGATCTCTCATGTGGTCGTGATGAGGTCCGCCGTTCAATCCTCGAGGCCGGCAAGGAG
CTCGGATTCTTCCAGGTCGTCAACCATGGCGTCTCCAAACAGGTCATGCGGGACATGGAG
GGCATGTGCGAGCAGTTCTTCCATTTGCCGGCAGCGGACAAGGCATCGTTGTACTCGGAA
GAGCGACACAAGCCAAACAGGCTCTTCTCCGGTGCTACCTATGACACGGGGGGCGAGAAA
TACTGGCGGGACTGCCTCCGCCTTGCCTGCCCCTTCCCAGTTGACGACAGCATCAACGAA
TGGCCCGATACTCCCAAAGGGCTCCGGGACGTTATCGAAAAGTTCACCAGCCAAACCAGA
GATGTAGGGAAGGAATTGTTGCGCCTCTTGTGTGAGGGTATGGGGATCCGGGCTGACTAC
TTTGAGGGAGACCTTAGCGGGGGTAATGTGATCCTCAACATCAACCACTATCCATCTTGC
CCGAATCCAGACAAAGCGCTTGGACAGCCGCCACATTGTGACCGAAATCTCATCACCCTC
CTACTCCCTGGCGCTGTCAATGGCCTCGAGGTCTCCTACAAGGGGGACTGGATCAAGGTT
GACCCTGCACCTAACGCATTTGTCGTCAACTTCGGCCAACAACTCGAGGTTGTGACAAAT
GGGTTGTTAAGGAGCATAGAGCATCGTGCGATGACAAACTCGGTGCTTGCACGCACATCG
GTGGCTACCTTTATTATGCCTACTCAAGAATGTCTTATTGGTCCCGCGAAGGAGTTCCTT
AGTGAAGAAAACCCACCGTGCTACCGCACCATCATGTTTCGTGACTTCATGCGCATCTAC
AATGTTGTCAAGCTTGGGTCATCGCTCAATCTCACAACCAATCTCAAGAACGTCCAGAAG
GAGATATAAAGCAAATCTACAAGACTCCTTCAAGATCTGGAATTATCCTATTCCCACTTG
TTATGTTTCTTACCTATGCCATAGATCTCAGTTGTGTCCAATTGTTGCTATGCAACAACT
ACATGTACTTTGATGATTTATAGCAATAAAATTAATAAATACATGATGAGTATAAGACGT
TAATCATCTTAGTGCTCATTTGTTGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251354.1	1247	0.0	52 - 1247	98	1174 / 1196	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
AK250875.1	1256	0.0	52 - 1254	98	1177 / 1203	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_1079.1	958	0.0	205 - 958	98	741 / 754	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_80402.1	661	0.0	21 - 661	96	617 / 641	None	ABC12916 ABC26639 ABC28494
MLOC_36197.1	1712	0.0	1097 - 1709	97	593 / 613	None	ABC12916 ABC26639 ABC28494
AK248982.1	685	0.0	52 - 498	98	440 / 447	None	ABC12916 ABC26639 ABC28494
MLOC_36197.2	1939	1e-153	1097 - 1421	97	315 / 325	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_49397.1	264	1e-88	16 - 211	97	190 / 196	None	ABC12916 ABC26639 ABC28494
MLOC_48407.1	175	6e-82	1 - 175	98	172 / 175	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_49058.1	561	1e-68	1 - 157	97	152 / 157	None	ABC12916 ABC26639 ABC28494