barSeed - Barley Seed Development Database

Probe ABC28494

Source Contig ABC28494

barSeed

Links

Affymetrix Source Sequence (1284 bp)

>ABC28494 1284
ACAACATTGTAGTGCACTGCTTTCCGCATCCCATCTTCCATCCCCCCCCTGATTTTACCA
TGGAGAACATCCTTCATGCAACCCCAGCTCATGTGTCCCTCCCGGAAAGCTTCGTCTTCG
CTTCCGACAAGGTCCCGCCGGCCACCAAGGCTGTCGTCTCGCTGCCCATCATCGATCTCT
CATGTGGTCGTGATGAGGTCCGCCGTTCAATCCTCGAGGCCGGCAAGGAGCTCGGATTCT
TCCAGTCGTCAACCATGGCGTCTCCAAACAGGTCATGCGGGACATGGAGGGCATGTGCGA
GCAGTTCTTCCATTTGCCGGCAGCGGACAAGGCATCGTTGTACTCGGAAGAGCGACACAA
GCCGAACAGGCTCTTCTCCGGTGCTACCTATGACACGGGGGGCGAGAAATACTGGCGGGA
CTGCCTCCGCCTTGCCTGCCCCTTCCCAGTTGACGACAGCATCAACGAATGGCCCGATAC
TCCCAAAGGGCTCCGGACGTTATCGAGAAGTTCACCAGCCAAACCAGAGACGTGGGGAAG
GAATTGTTGCGCCTCTTGTGTGAGGGTATGGGGATCCAGGCTGACTACTTTGAGGGAGAC
CTTAGCGGGGGTAATGTGATCCTTAACATCAACCACTATCCATCTTGCCCGAACCCAGAC
AAAGCGCTTGGACAGCCGCCCCATTGTGACCGAAATCTCATCACCCTCCTACTCCCTGGC
GCTGTCAATGGCCTCGAGGTCTCCTACAAGGGGGACTGGATTAAGGTTGACCCTGCACCT
AACGCATTTGTCGTCAACTTCGGCCAACAACTCGAGTTGTGACAAATGGGTTGTTAAAGA
GCATAGAGCACCGTGCAATGACAAACTCAGCGCTTGCACGCACATCGGTGGCTACCTTTA
TCATGCCTACTCAAGAATGTCTTATTGGTCCCGCGAAGGAGTTCCTTAGCAAAGAAAACC
CACCGTGCTACCGCACCACCATGTTTCGTGACTTCATGCGCATCTACAATGTTGTCAAGC
TTGGGTCATCGCTCAATCTCACAACCAATCTCAAGAACGTCCAGAAGGAGATATAAAGCA
AATCTACAAGATTCCTTCAAGATCTGGAATTATCCTATTCCCACTTGTTATGTTTCTTAC
CTATGCCATAGATCTCAGTTGTGTCCAATTGTTGCTATGCAACAACTACATGCACTTTGA
TGATTTATAGCAACAAAATTAATAAATACATGATGAGTATAAGACGTTAATCATCTTAGT
GCTCATTTGTTGTCACTTACTTGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251354.1	1247	0.0	2 - 1247	98	1227 / 1246	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
AK250875.1	1256	0.0	2 - 1254	98	1223 / 1253	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_1079.1	958	0.0	206 - 958	96	723 / 753	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_36197.1	1712	0.0	1098 - 1709	99	603 / 612	None	ABC12916 ABC26639 ABC28494
MLOC_80402.1	661	0.0	24 - 661	97	619 / 638	None	ABC12916 ABC26639 ABC28494
AK248982.1	685	0.0	2 - 498	98	488 / 497	None	ABC12916 ABC26639 ABC28494
MLOC_36197.2	1939	1e-158	1098 - 1419	98	316 / 322	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_49397.1	264	2e-112	17 - 261	97	237 / 245	None	ABC12916 ABC26639 ABC28494
MLOC_48407.1	175	6e-87	1 - 175	100	175 / 175	CUST_25612_PI390587928 CUST_1773_PI390587928	ABC12916 ABC26639 ABC28494
MLOC_49058.1	561	2e-76	1 - 156	100	156 / 156	None	ABC12916 ABC26639 ABC28494