barSeed - Barley Seed Development Database

Probe CUST_25298_PI390587928

Source Contig U35_2585

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25298_PI390587928	Hv_44K_v2	ACTGGGCATGCCCCATGAATTTGATGATACATTCAAATAAATGGACTTGATGCAACATTG	1453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365298	3064	2e-24	2980 - 3039	100	60 / 60	plus	ABC09815 ABC40947 ABC47127
JLOC1	JLOC1_43866.1	1175	8e-25	1104 - 1163	100	60 / 60	plus
Harvest21	ABC09815	1477	3e-25	36 - 95	100	60 / 60	minus	ABC09815
Harvest35	U35_2585	1548	3e-25	1454 - 1513	100	60 / 60	plus

Contig Sequence (1548 bp)

>U35_2585 1548 Hv_44K_v2
TGGTCTTTCTCAGCAGTTGGTTTCACCTCTTGGTAGTAAAATTCAACAACAGCCAGTTCT
GAAGACTAACGATGCAGTTAGCTCTGATTCTAGTAACACAAGTGAAAGTGCAGTTCTTGG
AGGAAGGGTATTTTCTCCTCCTGTTCCTGGGGCTCAGTGGAGGGCTCAAGCTCCTGCTGG
TTTCCAAAATCAAAGTGAAACTGGTCAATTTCGTGGAAGACCTGAGGTCACCGACCAAAG
GGAGAAGTACTTGCAAAGATTGCAACAAGTACAGCAGCAGCAGGGCAACCTTCTTAACAC
TTCTCATATAACAGGCATCAACCAGAAGCAATTTCCAACCCAGCAGCCCAATTCCCTCTT
ACAGCAGTTTAATTCTCAGAGTTCTTCTATCTCTTCTCAAGGGGGCCTTGGGCTAGGGGT
TCAGGGACCAGACGCTGGGCAAACAAAAAGTGACGAGCAACAAGGCTTGGCCGATGATGC
TGGTGTGGAGTCTGCTGCAACAACTGGACCGATTAAGCACACCAATGAAGATGACACGAA
GGCTCCTTACTCGAATCCTCCAGCATCCATAGCAGAAGGCACCCAGCTATCTAGAGACAC
TGATCTATCACCCGGGCAGCCTATGCAACCTGGCATGCCATCATCTGGTGTTGGTGTTAT
TGGCCGGAGGAGTGTATCTGATTTTGGAGCAATTGGAGACAATCTCAGTGGAGCTTCGGT
AGTTTCTGGTCACGATCACCTTTATAATTTGCAAATGCTCGAAGCTGCATACCACAGGCT
TCCACAGCCTAAGGACTCTGAGCGTGCGAAAACTTATATTCCGAGGCACCCTTCAGTGAC
CCCTGCCAGTTACCCACAGATTCAGGCACCAATTGTGACAAATCCTGCCTTTTGGGAAAG
GCTCGGTAGCGATACATTATCTACAGATATGCTATTCTTTGCATTCTACTATCAGCAGAA
CTCGTACCAACAATATTTGGCCGCTAAAGAACTAAAAAAGCAGTCATGGAGATTTCACAG
GAAGTACAATACTTGGTTCCAACGGCATGTGGAGCCACAGGTCACGACGGATGAGTATGA
GCGGGGATCGTACGTGTACTTTGATTTTCATCTCGCAGATGATGGAAATGGGTGGTGCCA
AAGGATCAAGAACGACTTCACATTTGAATACAACTTCCTTGAGGATGAACTGTCAGTACA
ACCAAACTAGGGCACTAGGGCTGAGAAAAATGTTTGCTCAATTGCGACTCATGTAATTTT
CAGAATGGAACTGTTGGAATCTGGAACAAATTCCCCAGTTGTAAGTTGTAACCTTGTGGG
TGAATTTAAATTTAGAGCTGTTGTGTGCATTACTGGTCCTAGCCCTCAGTCTGAACCTTA
AGCTGAACTAGATCCAGATGCCCTCAGTCTGAACCTTAAGCTGAATTAGATCCAGATTTC
CTAGAAACTGGGAACTGGGCATGCCCCATGAATTTGATGATACATTCAAATAAATGGACT
TGATGCAACATTGAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_2585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44900.2	818	0.0	protein\|CCR4-NOT transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g13450.1	867	0.0
Arabidopsis v10	AT5G18230.2	845	2e-95	transcription regulator NOT2/NOT3/NOT5 family protein \| chr5:6021610-6027031 REVERSE LENGTH=845