barSeed - Barley Seed Development Database

Probe CUST_25217_PI390587928

Source Contig U35_15900

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25217_PI390587928	Hv_44K_v2	CCATGTCCTAAGTTCGAATTCATATGTGGTGTACTATTGTTATAGAAAAGCTAATGGATC	907	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363817	5986	2e-24	2834 - 2893	100	60 / 60	plus	ABC04362 ABC06621 ABC14088 ABC15766 ABC40605
JLOC1	JLOC1_24062.1	1096	8e-25	933 - 992	100	60 / 60	plus
Harvest21	ABC04362	1064	3e-25	901 - 960	100	60 / 60	plus	ABC04362
Harvest21	ABC47041	288	8e-21	1 - 58	97	56 / 58	minus
Harvest35	U35_15900	1080	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_15900 1080 Hv_44K_v2
CCCGTGAAGCGAAGGACGGGACGGTTGGGGTGGCCATCTGCTGCGGCCCTCACCGCAGCC
TTCGCTTCATCCACCTCCTCCTGACTGCTAGCTCCCTCCATAACATCAACCTCGACTCGC
TCCAGGGAAGGGAGCTCCAGTGCCAAGGACCTCCCGAGCAGCGCAGCACTCCACCTACCA
GCCGGCCTCTTCCCACCGCCCCCAAATTCTACCGAGCAGCTCAGCCGGCCAACCCATGGC
GCACTGCCTCGCCGCCGTTTCCTCCTTCTCGCCGTCCGCCGTCCGCCGGCGGCTGTCCAG
CCAGGTGGCTAATGTAGTTTCGAGCCGGAGCTCAGTTTCTTTCCATAGCCGGCAGATGAG
CTTTGTATCCATCAGTTCAAGACCGAGTTCGCTTCGGTTTAAGATTTGTTGTGCGGCCAT
GGGAGAGGCACAGGCCAAGAAAGAGACAGTCGACAAGGTTTGTATGATAGTCAAGAAGCA
GCTGGCAGTCCCTGATGGTACACCTGTCACAGCGGAGTCGAAATTCTCCGAACTTGGTGC
CGACTCACTAGACACGGTTGAGATTGTGATGGGCCTCGAGGAAGAGTTCAACATCACTGT
TGATGAAACAAGCGCGCAGGACATTGCAACCGTGCAGGATGCAGCGAACCTTATCGAGAA
GCTTGTGACAGAGAAGACCGCATAAGCGCCTAGGTTCATTGGACAGCTTTAGAAGGCAAA
GGTGTCATCTGGATCTGTGGACTTCTGATTTTTCGGTCGCATTTGGGGCGAGAGAAAATA
ATTTATGGACAGCTTTGCATTCAGTCTATGTTGTGTGTTCATTGCCATTTGTTCTTTCTT
CATCCTCTCGAGATTTTGTGTTGTTGCTGCGGGTTAATTACCCAAAGGCTTCATAAACAA
GCTAGGACCATGTCCTAAGTTCGAATTCATATGTGGTGTACTATTGTTATAGAAAAGCTA
ATGGATCTATGAAGATTGAAGAGTCGTTGCAGTTTTAAAAAAAAAAAAAAAAATGCATAT
CTGAGAAGCTATACAGCTGGGAATATATTATTTCTTTTGTTTCATACCAAAAAAAAAAAA

Homology of Contig U35_15900 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34890.1	145	5e-57	protein\|acyl carrier protein, putative, expressed
Brachypodium v1_2	Bradi4g05860.2	150	5e-68
Arabidopsis v10	None