barSeed - Barley Seed Development Database

Probe CUST_25122_PI390587928

Source Contig U35_38649

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25122_PI390587928	Hv_44K_v2	ATGTTTTTCCTCGTTGACTGACACCGCCGTTGTGCTGCAACTGCATGATCGCCGGACGGA	193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249770.1	2323	2e-24	210 - 269	100	60 / 60	plus	ABC04823 ABC26033 ABC37753
MLOC	AK372913	2156	2e-24	210 - 269	100	60 / 60	plus	ABC04823 ABC26033 ABC37753
Harvest35	U35_38649	501	3e-25	194 - 253	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_38649 501 Hv_44K_v2
CCGGCAAATCAAATCACACTCGTGCCAGGAGACGAGAGCCCCCCGTCCCCTTCCTCCTCC
ACCGAGCTCCAGCTCCCGCTCCGGAGGACACGGGCCATGGCGCCCCCTCTCTCCTCCTGG
CCATGGGCGAGCCTGGGCATATACAAGGCACGCACCGAGCACCTCCTTTTTTTCATCCTC
GCCGCCCGTCTCAATGTTTTTCCTCGTTGACTGACACCGCCGTTGTGCTGCAACTGCATG
ATCGCCGGACGGACGCGCGCGCAGTACTTCCTGCTGGCCCCGCTGGTGTGGAAGGTGGCG
CAGGAGTGGACGGAGCAGGGCGGCGCGCCGCTGGGCTCGCGGTGGCTGCACCTGCTGCTG
CTCTTCTCCGCCCGCGGGCTCACGTACCAGTTCTGGTTCTCCTACAGCAACATGCTCTTC
CTCACCCGCCGCCGCCGCGTCGTCCCCGACGGCGTCGACTTCCGCCAGGTCGACCACGAG
TGGGACTGGGATAACTTCCTG

Homology of Contig U35_38649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None