barSeed - Barley Seed Development Database

Probe CUST_2500_PI390587928

Source Contig U35_14294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2500_PI390587928	Hv_44K_v2	GTCAATAAACATTAGGACGTTGGCTATATAACAAACGGCCGAGTATTTCGCTCGTTCCGT	1947	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248501.1	2067	2e-24	1995 - 2054	100	60 / 60	plus	ABC05304 ABC05305
MLOC	MLOC_66416.1	1683	7e-23	370 - 429	98	59 / 60	minus	ABC05305
JLOC1	JLOC1_43763.1	1419	4e-23	100 - 159	98	59 / 60	minus
Harvest21	ABC05305	2051	3e-25	1948 - 2007	100	60 / 60	plus	ABC05305
Harvest35	U35_14294	2051	3e-25	1948 - 2007	100	60 / 60	plus

Contig Sequence (2051 bp)

>U35_14294 2051 Hv_44K_v2
AGCGCGCGGCGGCCGGAGCCGAACCCGGGGAAGGGGAAGGGGAAGGAGAAATGGCGTCGA
TGCAGAGCTGGCGCAAGGCGTACGGCGCCATCAAGGACACCACCACCGTCAGCCTCGCCA
ACATCAACTCCGACTTCAAGGATCTGGATGTGGCGATCGTGAAGGCGACTAACCACGTGG
AGTGCCCGCCCAAGGAGCGCCACCTGCGCAAGATTGCTGCGGCGACGTCCATCGCGAGGC
CACGGGCAGACATCGCCTACTGCATCCACGCTCTCTCTCGCCGTCTCTCCAAGACCCGCA
ACTGGATTGTAGCACTAAAGACACTTGTAGTGGTTCATAGGCTTCTACGAGAGGGGGACC
CTACATTTCGGGAAGAGCTTCTTAATTTTACACAAAGGGGGCGTATTCTGCAGCTCTCAA
ACTTCAAGGATGACTCCAGTCCAATTGCTTGGGACTGTTCCGCATGGGTTCGCACATATG
GTCAGTTTTTGGAGGAAAGATTGGAATGCTTCAGGATCCTGAAATATGATGTTGAGGCTG
AGCGTTTATCCAAACAAGGTCAAGGTCCTGAAAAGGGACACAGTAGAACCAGAGACCTAG
ATTCCCAGGATCTGTTAGAGCAGTTGCCAGCTTTGCAGCAGTTACTGTATCGGCTTGTTG
GATGTCGGCCAGAAGGAGCTGCGAATAATAACTACTTGGTGCAGTATGCTCTAGCTTTGG
TGTTAAAAGAGAGTTTCAAAATTTATTGCGCGATCAATGATGGAATTATTAACCTTGTTG
ATAAGTTTTTTGAGATGGCAAGACATGAAGCCCTTAAGGCCCTTGAAATTTACAGGAGGG
CTGGCCAACAGGCAGGGAATCTATCAGACTTTTATGAAAATTGCAGGGGTCTAGAACTTG
CGAGGAATTTTCAGTTTCCCACTCTGAGGGAGCCACCACAAACATTTCTTGTGACCATGG
AGGAGTACGTGAGGGACGCTCCGCGTATGGTTCCGGTTCGAGAGCCACTGGAATTTCCTG
AGAGGCTTCTTCTTACATATAAACCCGAAGAAGCAGAGGAAGTTTCTGTACCCGATCCTG
TCGAAGAGGAACAACCACCAGTTGAAGAACCTGTTCCAGTACAGTCCGTGCCCGAAGTTG
TTTCACCTCCTTCCAAGCCTGTTGTGGCTGATACTGGTGATCTACTGGGCTTAAATGATC
CGAGCCCTGCTGTATCAGCAATAGAGGAGAGCAATGCTCTTGCCTTGGCCATTATTCCAT
CAGATCCAAGTACTTCAACAACTAGCAGCACTACTTGGCAGGACAAAGGATTTGATCCAA
CAGGCTGGGAACTCGCCCTTGTTACTGCTCCAAGTAACACAAATTCGTCTGTTACAGATA
GTCAATTGGGTGGTGGACTTGACAAGCTCATCCTTGACAGCCTTTATGACGAGGGAGCCT
ACAGGCAGTCACAACAACAGCAGCTGTACGGTTCATCAGCTCCCAACCCATTCATGACAA
ACGATCCTTTCGCGATGTCGAATCACGTCGCCGCTCCGTCGTCAGTTCAAATGGCTGCCA
TGTCTCAGCAGCAGCAGCAGATCCCAACGATGATACATCAGAATCCCTTCGGGCCACCAA
TTCAGCCGCAGCATCCGGGCGCTGGCCCTGCAGCAGTAAACCCTTTCCTGGATAGCGGCT
TCGGCGCGTTCCCGGCGGCAAACAACCAACAACAGCAAGCCAACCCATTTGGTGGTAGCC
TTCTATAGGCTTGCAATAGGCGAGGAGCTGGAGCTAATAGTACCCCGAGCAAATGCGATT
TTTCGTGTGACTGTAATATGCATTGTGCCTGGCCATTCATGTATGTCTACCTGTGTAATG
ATATGTGTATTCGCTCCGCCACACGGGACTCTGCCAAGTGACCCTTGTTGTAAAGAAATG
TAGTGACCTGTGTAACACCAGATATATGTCAATAAACATTAGGACGTTGGCTATATAACA
AACGGCCGAGTATTTCGCTCGTTCCGTGCCGTGGCTGTTCAATTGCCATCTACCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g47550.1	568	protein\|ANTH/ENTH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g17670.1	568
Arabidopsis v10	AT2G01600.1	571	ENTH/ANTH/VHS superfamily protein \| chr2:268975-272356 FORWARD LENGTH=571