- Probe CUST_24682_PI390587928
- Source Contig U35_20674
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24682_PI390587928 | Hv_44K_v2 | CTTGCTTAGTTTAGCTATTGTATTTGTTGTGACCTTGCTGCCGCAACTGTGCTTTTCGAC | 170 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.395 | 1.315 | 1.222 | 0.936 | 0.360 | 0.448 |
| Raw | 29.509 | 46.389 | 35.010 | 43.696 | 4.056 | 7.003 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_48479.1 | 656 | 2e-24 | 293 - 352 | 100 | 60 / 60 | minus | ABC15825 |
| MLOC | MLOC_80316.7 | 1994 | 9e-22 | 1689 - 1746 | 98 | 57 / 58 | plus | ABC15825 ABC18126 |
| MLOC | MLOC_80316.10 | 3364 | 9e-22 | 3003 - 3060 | 98 | 57 / 58 | plus | ABC15825 ABC18126 |
| MLOC | MLOC_80316.1 | 1607 | 9e-22 | 1236 - 1293 | 98 | 57 / 58 | plus | ABC15825 ABC18126 |
| MLOC | MLOC_80316.2 | 3302 | 9e-22 | 2931 - 2988 | 98 | 57 / 58 | plus | ABC15825 ABC18126 |
| MLOC | MLOC_80316.3 | 1442 | 9e-22 | 1071 - 1128 | 98 | 57 / 58 | plus | ABC15825 ABC18126 |
| JLOC1 | JLOC1_31133.1 | 651 | 8e-25 | 291 - 350 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_53477.5 | 3291 | 5e-22 | 2918 - 2975 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_53477.4 | 1958 | 5e-22 | 1585 - 1642 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_53477.3 | 3653 | 5e-22 | 3280 - 3337 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_53477.2 | 1596 | 5e-22 | 1223 - 1280 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_53477.1 | 1432 | 5e-22 | 1059 - 1116 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_20674 | 1004 | 3e-25 | 171 - 230 | 100 | 60 / 60 | plus |
Contig Sequence (1004 bp)
>U35_20674 1004 Hv_44K_v2 CACGCGTCCGGCTTGTTTGGTGCTAGTCCTGCTGTATGTAATTATTTTGCGTATCTTTGT AATATTCAAGAGCTCGTTAGTCCTGCCAGGACACGGTTTGATGGAAATTCGTCGGATCCT TTCATTGTTTCCATGGTTGATGCAGTAGTTTCGTACCTGATGTGTTTGTGCTTGCTTAGT TTAGCTATTGTATTTGTTGTGACCTTGCTGCCGCAACTGTGCTTTTCGACCGGGTCGAAC TAGTACAACTTTTGTTGTTGTAGCCCATGCCTCGTGTTGGTGTGTATTCTAATGAATATT TGTCAACCTGATGCATGATGATCATGATTTTGTAGACAAGTACCATTCCCCATTAAAAAT CCTCATGCATGATGATCATGGTCTCGTTTTTAAGATCTGTTTTCCTCGTGCTTAAAATTT GACATGCCTGAATGAACTCATTTTTAGTTCTTTTTATTTCTATGATCAATTTAATTAAAG TTTCACATGTTAGTATACTATACATTAAAAAATCCTAGCTAGTGAGAATATTTTAGTCAC TCCATAAACACATATTGGTTAGTGTTAGTCATACTATTTTCGTGTTGTGTTTTCCACAAT AACATGATTAATTAGGTTCCATCCTCAGCTTTAACGTCTTCTTCCAAAGGTTCTCATCGA TTAGTACCGTCAACCTGTACATATTATACTATTTTGTTTACTATTTTGTTACCTCATTGG CTACTATTTTGTTCTTATTTTTTGCATAGGTGAAATGTGAAGCCAAGCGTGAAGTCGTGA AGCCTATATGGAAAGAGTAGCATATCAATATATTGTAATAGTATACTGTAGTAGGCATAT TTGAGTTGTAGTAGTGTAAAGATTGTAATAGACTAATTTAGTGTTTTTTGGACTAATTTT ATTTGTTGTGTGATCTGTTCATAATATTGATTTCGTATGTGATTTGTATACCTATGAAAT GGAAACCTCCCAAATTGTTTGACAAATTAAAAAAAAAAAAAAAA
Homology of Contig U35_20674 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |