barSeed - Barley Seed Development Database

Probe CUST_24183_PI390587928

Source Contig U35_18459

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24183_PI390587928	Hv_44K_v2	CCAAAGAAATTAAGTCTAGAGTGTAAAAGGGCTTATAGCCTTATACTGAATAAACACGAG	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67930.1	702	9e-22	648 - 702	100	55 / 55	plus	ABC11623 ABC23667 ABC44857
JLOC1	JLOC1_44899.1	715	8e-25	656 - 715	100	60 / 60	plus
Harvest21	ABC23667	516	3e-25	36 - 95	100	60 / 60	minus	ABC23667
Harvest35	U35_18459	518	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_18459 518 Hv_44K_v2
TTGTGTGCTTTAGGATCAAGGCAAGGGGAGACATGACGGAGGAGGATGCCGACGAGGTCA
ACCGCTTGCTAATGGAGAATCTAAACAAGACTGGCAAGGCTTATCTTGCGCACACGGTGG
TCGGTGACAGATTCGTGCTTCGTTTTGCCGTTGGGTCATCACTGCAGGAGGAGAGGCATG
TGAGAAGTGCATGGGACCTCATCAAGAAGACTACGAGCAGTATCATGGATTAAGTGCAAT
GACCTACTACCGCACAAGCTCAAGGAGCTACACAAATCCCTATATTTGGGGTACAACTAT
TCTTTTAAATTTATCTTTTTTCTATTTTTCTTTGATTTTGGTTATTATTTATTTGGACAT
GTAGTTCCAATTCCGTTTTGTAATCTATACCGACCGAGGGTATATATATGTAGAAGGCCG
GTACCAAAGAAATTAAGTCTAGAGTGTAAAAGGGCTTATAGCCTTATACTGAATAAACAC
GAGATACTGTTTTTATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None