barSeed - Barley Seed Development Database

Probe CUST_23775_PI390587928

Source Contig U35_16963

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23775_PI390587928	Hv_44K_v2	GTGCAACTATGTTACTTTTCGGGTGACAGGGTATAATCAAAAATCAAAATTCACAGCAAA	1599	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	34.033	7.638	1.449	0.496	0.217	0.344
Raw	2282.577	796.230	133.925	69.693	10.698	19.109

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34741.1	734	2e-23	411 - 468	100	58 / 58	plus	ABC06685 ABC06686
MLOC	AK251038.1	2460	7e-23	2404 - 2460	100	57 / 57	plus	ABC06685 ABC06686
JLOC1	JLOC1_22434.1	760	1e-23	509 - 566	100	58 / 58	plus
Harvest21	ABC06685	1656	3e-25	1583 - 1642	100	60 / 60	plus	ABC06685
Harvest35	U35_16963	1675	3e-25	1600 - 1659	100	60 / 60	plus

Contig Sequence (1675 bp)

>U35_16963 1675 Hv_44K_v2
AGCGTGCGTCCTGTCCTGCTCCTGTCGTCGACGACGAGTCCCTGTCGACCACAATGGCAG
CGGCGAGGTTGCTCCTGCTGCCCGGCGTCGCTCTCGTCGCCCTCCTCCTCTTCCTGCCCT
TCGGCGCCGCCGCCGCTGGCACCGCCGATGGGTCAGAGGAGTGGGGATACGTGCAAGTCC
GGCCGAAGGCGCACATGTTCTGGTGGCTGTACCGTAGCCCCCACCGCGTCGACAACGACA
CAGCGCCATGGCCGACCGTGCTGTGGCTGCAGGGCGGCCCGGGCGCTTCGGGGGTGGGTT
ACGGCAACTTCATGGAGATCGGGCCGCTGGACACGGAGCTCAAGCCCCGCGCCACCACCT
GGCTCAACAAAGCCGACCTCCTCTTCGTCGACAACCCAGTGGGCACGGGGTTCAGCTTCG
TGGAGGGCGGCAACAAGAGCCTGATGGCGCAAACGGACGGGCAGGCGGCGCGCGACCTGA
CGGCGCTGCTCATCAAGCTCTACCGGCACAAGAAGCTGCTGCAGGGGAGCCCGCTCTACA
TCGTGGCCGAGTCGTACGGCGGCAAGTTCGCCGCCACCACCGCCCTCGCCGCGCTCAGGG
CCATCCGCCAGGGACATCTCAACGCCAAGCTTGGAGGCGTGGCCCTGGGGGATAGCTGGA
TTTCACCCGAGGACTCCGTGTTGTCATGGGGCCCGTTACTGTACCAACTGTCCCGTATCG
ACGAGAAGGGACTGCGGCAATGCGACAGCCTCGCGAAGCAGATCAAGGCGCAGCTCAAGG
CGAAGCAGTACGGGGCGGCCGAGAAGTCGTGGGAGGACCTCGAGTCGGCCGTGCTCGAGC
ACAGCAACTCCGTCAACTTCTACAACATCCTCAAGGACGAGTCGTCGGAGGACGCGGCAG
TGCTGGCCACCGCGGGGGCGGCCGTGAGGAAGGTGGGGTACACGCGCTACATGAGCTCCA
AGGCGACGAGGGAAGGCGGTCTCGACGGCCTCATGAACGCCGAGGTCAAGGCCAAGCTCG
GCATCATCCCCAACAACTTCACCTGGGGAGAGCAGTCGGGCGACGTCTTCCAAGCCCTCG
CAGGCGACTTCATGAAGCCAAGAATCAACGAGGTTGACGAGCTCCTCAAATTTGGAGTGG
AAGTGACCATATACAGCGGACAGCTCGATCTCATCTGCGCAACCAAGGGAACACTGGACT
GGGTCCAGAAGCTCAAGTGGGAAGGCCTTAAGAACTTCACAGACTCGCCCAGAAAGCCGC
TCTACTGCAAGGCGGGTGAAGCAGCCGGCACCCAGGCCTTTCTCAAGTCGTACAAGAACC
TGAAATTCTACTGGATACTCGGAGCTGGCCACATGATACCGATCGACAACCCTTGCCCTG
CACTCAAGATGCTGGGTGACATTACACATTCTCCTGCTCGGTAGAAAGAAGACGACGGCG
ACGCACCAAGCAGCCTGACACCAACACAAGAAATGATTCCTTTTTTTCCCTTTTTCTTTT
CACAGTAAAAATGCTGGACGTTTATGAGATACGAAAGATGAGAAAAGAGAGATAAATGAA
TAGAGAGACATCTGTTTGACTTTATAGCATACAGTACTGGTGCAACTATGTTACTTTTCG
GGTGACAGGGTATAATCAAAAATCAAAATTCACAGCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16963 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44640.1	469	0.0	protein\|OsSCP41 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g43020.1	472	0.0
Arabidopsis v10	AT2G27920.1	461	1e-160	\| Symbols: SCPL51 \| serine carboxypeptidase-like 51 \| chr2:11885777-11889043 REVERSE LENGTH=461