barSeed - Barley Seed Development Database

Probe CUST_23774_PI390587928

Source Contig U35_16964

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23774_PI390587928	Hv_44K_v2	TACGAAAGATGAGAAAAGAGAGATAAATGAATAGAGAGACATCTGTTTGACTTTAAAAAA	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251038.1	2460	9e-22	2334 - 2388	100	55 / 55	plus	ABC06685 ABC06686
MLOC	MLOC_34741.1	734	9e-22	341 - 395	100	55 / 55	plus	ABC06685 ABC06686
JLOC1	JLOC1_22434.1	760	5e-22	439 - 493	100	55 / 55	plus
Harvest21	ABC06686	697	3e-25	628 - 687	100	60 / 60	plus	ABC06686
Harvest21	ABC06685	1656	2e-22	1513 - 1567	100	55 / 55	plus	ABC06685
Harvest35	U35_16964	697	3e-25	628 - 687	100	60 / 60	plus
Harvest35	U35_16963	1675	2e-22	1530 - 1584	100	55 / 55	plus

Contig Sequence (697 bp)

>U35_16964 697 Hv_44K_v2
CCACGAGGCTACAACATCCTCAAGGACGAGTCGTCGGAGGACGCGGCAGTGCTGGCCACC
GCGGGGGCGGCCGTGAGGAAGGTGGGGTACACGCGCTACATGAGCTCCAAGGCGACGAGG
GAAGGCGGCCTCGACGGCCTCATGAACGCCGAGGTCAAGGCCAAGCTCGGCATCATCCCC
AACAACTTCACCTGGGGAGAGCAGTCGGGCGACGTCTTCCAAGCCCTCGCAGGCGACTTC
ATGAAGCCAAGAATCAACGAGCTCGATCTCATCTGCGCAACCAAGGGAACACTGGACTGG
GTCCAGAAGCTCAAGTGGGAAGGCCTTAAGAACTTCACAGACTCGCCCAGAAAGCCGCTC
TACTGCAAGGCGGGTGAAGCAGCCGGCACCCAGGCCTTTCTCAAGTCGTACAAGAACCTG
AAATTCTACTGGATACTCGGAGCTGGCCACATGATACCGATCGACAACCCTTGCCCTGCA
CTCAAGATGCTGGGTGACATTACACATTCTCCTGCTCGGTAGAAAGAAGACGACGGCGAC
GCACCAAGCAGCCTGACACCAACACAAGAAATGATTCCTTTTTTTCCCTTTTTCTTTTCA
CAGTAAAAATGCTGGACGTTTATGAGATACGAAAGATGAGAAAAGAGAGATAAATGAATA
GAGAGACATCTGTTTGACTTTAAAAAAAAAAAAAAAA

Homology of Contig U35_16964 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44640.2	358	1e-77	protein\|OsSCP41 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g43020.1	472	1e-70
Arabidopsis v10	None