barSeed - Barley Seed Development Database

Probe CUST_23618_PI390587928

Source Contig U35_15691

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23618_PI390587928	Hv_44K_v2	CCGGCATTGTCTGCACCAATTTGCTTGCATGATCAATCAATCAATTGCTTCTTCAAAAAA	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16306.1	437	9e-22	376 - 430	100	55 / 55	plus	ABC03684 ABC03686
JLOC1	JLOC1_11229.1	437	5e-22	376 - 430	100	55 / 55	plus
Harvest35	U35_15691	628	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_15691 628 Hv_44K_v2
CACATCGGCGGATACCGTGGGTGGCGTCTCAGGGTGCTGGAGGCGTTTGTCATCATCCTC
GCCTTCACGCAGCTGCTCTACGTGCTTGCTCTCCACTCCGGGCTCTTCGGAAACCAGTTC
GGTGACCATGCTGGCGGTGGTGGGTATCCGGCGGAGCACGGAGGATATGGCGCCGGCGAC
CCGCATAAAAAGGGCATGGGCACCGGCGGCGCGGCCAGGGTCTAATTAAGGCGCCGGTGA
TCGATCTGGGTGTGGTCAGGACCTCGGATAATAAGTACTATGTGTGGTGTTAGTGTGTGT
CACGTACGGTGTCGATGTGGCCTAGTACGTAGTAGTGTTGTTGTATGCATACATGTGGTG
TGCGTGTGCGTGTGTGTGTGTGTGTGCATGGCTGTAGACATGTACATATGCCTAGTGTAG
TGGGTGTGGGTGTTCTTTTTTGGCAGGGACGCTAGGTACTTACTTGCCTACTACGCACTC
ACACATGGTTTGTTTATACGCTGTGTCCGGTGAGCAGCTTTGCGATCTACTACTAATCGG
ATGGATGCTGCCTCATCCCGGCATTGTCTGCACCAATTTGCTTGCATGATCAATCAATCA
ATTGCTTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None