barSeed - Barley Seed Development Database

Probe CUST_23615_PI390587928

Source Contig U35_15694

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23615_PI390587928	Hv_44K_v2	AATGTGTGATGTCTGATTATATCCCTTTGCTTGACACCGAAAAGGTACTACTTTTCCCTC	1062	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58569.1	1995	7e-23	1191 - 1250	98	59 / 60	plus	ABC04416 ABC10269 ABC42882
Harvest21	ABC04416	1122	3e-25	1063 - 1122	100	60 / 60	plus	ABC04416
Harvest35	U35_15694	1122	3e-25	1063 - 1122	100	60 / 60	plus

Contig Sequence (1122 bp)

>U35_15694 1122 Hv_44K_v2
GTGGATCTCCTCCTCCCGCCCCGCCCCGCCCCACCTCCCCGCCCACGATAGCCCCCGCCG
CTCGCCCGTGGGCCCCGCCGCCTCCCGCTCCTCCGCTCCGAGGGCTCCAGGAAGGAGAGG
GGAGGGAAAGCTCGAGCCTTTGATGCCCGGCAGCCGATGGCGACGCCGGCCGTAGACAAG
CCCGACGGGGTGGAGATCCGCGAGGTGTGGGCGGAGAACCTCGAGGCCGAGTTCGCCGTG
ATCCGGGACATCGTCGACGACTACCCCTACGTCGCCATGGACACCGAGTTCCCGGGCGTC
GTCTGCCGCCCGCTCGGCACCTTCAAGTCCAACGCTGACTTCAACTACGCCACGCTCAAG
GCCAACGTCGACATGCTCAAGCTCATCCAGCTCGGCCTCACCTTCTCGGACGAGCGCGGC
GGCCTCCCCGCCCTCGGCCCGGACGGCCGCCCCTGCGTCTGGCAGTTCAACTTCCGGGGC
TTCGACCCGCGGACCGACGTCGCCGCCGCCGACTCCATCGACCTGCTGCGCCGCAGCGGG
ATCGACTTCGCCCGCCACGCCGCCGAGGGGGCTGACTCGCGCCGCTTCGCCGAGCTGCTC
ATGTCCTCCGGGGTCGTCCTCAACGCCGAGATCCACTGGGTCACCTTCCACAGCGGCTAC
GACTTCGGCTACCTGCTCAAGCTGCTCACCGGCTCCAACCTGCCGGACACCAGCTCCGGC
TTCTTCGACCTCATCAGGATTTACTTCCCCGTGATCTACGACATCAAGCACTTGATGAGA
TTCTGCAACAGCCTCCACGGCGGACTGAACAAGCTCGCTGAGCTGCTCGACGTCGAGCGG
GTCGGAATCTGCCATCAGGCAGGCTCTGATTCTCTGCTCACAGCGCTCTCTTTCAACAAG
CTCAAGGAGTCATACTTCGGTGGATTGACTGAGAAATATGCTGGTGTGTTGTATGGTCTA
GGCACAGAGGGCGGGGAAACCACCTCTGTTCACTGAGTACTGGATAGTTAAATAAATGAT
GAACTATTTATGAGAGAAAAAAAAAAAAAAAAATGCTGATTGAATGTGTGATGTCTGATT
ATATCCCTTTGCTTGACACCGAAAAGGTACTACTTTTCCCTC

Homology of Contig U35_15694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24990.1	281	7e-180	protein\|CAF1 family ribonuclease containing protein, putative, expressed
Brachypodium v1_2	Bradi4g30330.1	280	0.0
Arabidopsis v10	AT2G32070.1	275	4e-139	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275